PDB entry 6ixt

View 6ixt on RCSB PDB site
Description: Crystal structure of isocitrate dehydrogenase from Ostreococcus tauri in complex with NAD+ and Mg2+
Class: oxidoreductase
Keywords: isocitrate dehydrogenase NAD+, OXIDOREDUCTASE
Deposited on 2018-12-12, released 2019-12-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-06-16, with a file datestamp of 2021-06-11.
Experiment type: XRAY
Resolution: 1.78 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: isocitrate dehydrogenase
    Species: Ostreococcus tauri [TaxId:70448]
    Gene: BE221DRAFT_192402
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ixta_
  • Chain 'B':
    Compound: isocitrate dehydrogenase
    Species: Ostreococcus tauri [TaxId:70448]
    Gene: BE221DRAFT_192402
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ixtb_
  • Chain 'C':
    Compound: isocitrate dehydrogenase
    Species: Ostreococcus tauri [TaxId:70448]
    Gene: BE221DRAFT_192402
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ixtc_
  • Chain 'D':
    Compound: isocitrate dehydrogenase
    Species: Ostreococcus tauri [TaxId:70448]
    Gene: BE221DRAFT_192402
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ixtd_
  • Heterogens: NAD, MG, GOL, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ixtA (A:)
ghhhhhhhstasskitaapmvyvrgeemtayvmdlirsrwieprvdvggwetfdlraknr
ddtedrvlrdvieagkrikaifkeptvtptadqvkrlglrkswgspngamrrgwngitis
rdtihidgvelgykkpvlferhavggeysagyknvgkgkltttftpsegpdagktvvvde
reivdeeaavvtyhnpydnvhdlarfffgrcleakvtpyvvtkktvfkwqepfwqimrtv
fdeefkaqfvaagvmkegeelvhllsdaatmklvqwrqggfgmaahnydgdvltdelaqv
hkspgfitsnlvgvhedgtlikefeashgtvadmdearlrgeetslnplgmvegligamn
haadvhnidrdrthafttkmrtvihqlfregkgtrdlcgpsgltteqfidavaerlda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ixtA (A:)
skitaapmvyvrgeemtayvmdlirsrwieprvdvggwetfdlraknrddtedrvlrdvi
eagkrikaifkeptvtptadqvkrlglrkswgspngamrrgwngitisrdtihidgvelg
ykkpvlferhavggeysagyknvgkgkltttftpsegpdagktvvvdereivdeeaavvt
yhnpydnvhdlarfffgrcleakvtpyvvtkktvfkwqepfwqimrtvfdeefkaqfvaa
gvmkegeelvhllsdaatmklvqwrqggfgmaahnydgdvltdelaqvhkspgfitsnlv
gvhedgtlikefeashgtvadmdearlrgeetslnplgmvegligamnhaadvhnidrdr
thafttkmrtvihqlfregkgtrdlcgpsgltteqfidavaerld

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ixtB (B:)
ghhhhhhhstasskitaapmvyvrgeemtayvmdlirsrwieprvdvggwetfdlraknr
ddtedrvlrdvieagkrikaifkeptvtptadqvkrlglrkswgspngamrrgwngitis
rdtihidgvelgykkpvlferhavggeysagyknvgkgkltttftpsegpdagktvvvde
reivdeeaavvtyhnpydnvhdlarfffgrcleakvtpyvvtkktvfkwqepfwqimrtv
fdeefkaqfvaagvmkegeelvhllsdaatmklvqwrqggfgmaahnydgdvltdelaqv
hkspgfitsnlvgvhedgtlikefeashgtvadmdearlrgeetslnplgmvegligamn
haadvhnidrdrthafttkmrtvihqlfregkgtrdlcgpsgltteqfidavaerlda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ixtB (B:)
skitaapmvyvrgeemtayvmdlirsrwieprvdvggwetfdlraknrddtedrvlrdvi
eagkrikaifkeptvtptadqvkrlglrkswgspngamrrgwngitisrdtihidgvelg
ykkpvlferhavggeysagyknvgkgkltttftpsegpdagktvvvdereivdeeaavvt
yhnpydnvhdlarfffgrcleakvtpyvvtkktvfkwqepfwqimrtvfdeefkaqfvaa
gvmkegeelvhllsdaatmklvqwrqggfgmaahnydgdvltdelaqvhkspgfitsnlv
gvhedgtlikefeashgtvadmdearlrgeetslnplgmvegligamnhaadvhnidrdr
thafttkmrtvihqlfregkgtrdlcgpsgltteqfidavaerld

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ixtC (C:)
ghhhhhhhstasskitaapmvyvrgeemtayvmdlirsrwieprvdvggwetfdlraknr
ddtedrvlrdvieagkrikaifkeptvtptadqvkrlglrkswgspngamrrgwngitis
rdtihidgvelgykkpvlferhavggeysagyknvgkgkltttftpsegpdagktvvvde
reivdeeaavvtyhnpydnvhdlarfffgrcleakvtpyvvtkktvfkwqepfwqimrtv
fdeefkaqfvaagvmkegeelvhllsdaatmklvqwrqggfgmaahnydgdvltdelaqv
hkspgfitsnlvgvhedgtlikefeashgtvadmdearlrgeetslnplgmvegligamn
haadvhnidrdrthafttkmrtvihqlfregkgtrdlcgpsgltteqfidavaerlda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ixtC (C:)
skitaapmvyvrgeemtayvmdlirsrwieprvdvggwetfdlraknrddtedrvlrdvi
eagkrikaifkeptvtptadqvkrlglrkswgspngamrrgwngitisrdtihidgvelg
ykkpvlferhavggeysagyknvgkgkltttftpsegpdagktvvvdereivdeeaavvt
yhnpydnvhdlarfffgrcleakvtpyvvtkktvfkwqepfwqimrtvfdeefkaqfvaa
gvmkegeelvhllsdaatmklvqwrqggfgmaahnydgdvltdelaqvhkspgfitsnlv
gvhedgtlikefeashgtvadmdearlrgeetslnplgmvegligamnhaadvhnidrdr
thafttkmrtvihqlfregkgtrdlcgpsgltteqfidavaerld

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ixtD (D:)
ghhhhhhhstasskitaapmvyvrgeemtayvmdlirsrwieprvdvggwetfdlraknr
ddtedrvlrdvieagkrikaifkeptvtptadqvkrlglrkswgspngamrrgwngitis
rdtihidgvelgykkpvlferhavggeysagyknvgkgkltttftpsegpdagktvvvde
reivdeeaavvtyhnpydnvhdlarfffgrcleakvtpyvvtkktvfkwqepfwqimrtv
fdeefkaqfvaagvmkegeelvhllsdaatmklvqwrqggfgmaahnydgdvltdelaqv
hkspgfitsnlvgvhedgtlikefeashgtvadmdearlrgeetslnplgmvegligamn
haadvhnidrdrthafttkmrtvihqlfregkgtrdlcgpsgltteqfidavaerlda

    Sequence, based on observed residues (ATOM records): (download) 
    >6ixtD (D:)
skitaapmvyvrgeemtayvmdlirsrwieprvdvggwetfdlraknrddtedrvlrdvi
eagkrikaifkeptvtptadqvkrlglrkswgspngamrrgwngitisrdtihidgvelg
ykkpvlferhavggeysagyknvgkgkltttftpsegpdagktvvvdereivdeeaavvt
yhnpydnvhdlarfffgrcleakvtpyvvtkktvfkwqepfwqimrtvfdeefkaqfvaa
gvmkegeelvhllsdaatmklvqwrqggfgmaahnydgdvltdelaqvhkspgfitsnlv
gvhedgtlikefeashgtvadmdearlrgeetslnplgmvegligamnhaadvhnidrdr
thafttkmrtvihqlfregkgtrdlcgpsgltteqfidavaerld