SCOPe 2.08: Structural Classification of Proteins

PDB entry 6ixa

View 6ixa on RCSB PDB site
Description: cryo-em structures of alphacoronavirus spike glycoprotein
Deposited on 2018-12-09, released 2020-06-17
Made obsolete by 7cyc on 2020-12-23

The last revision was dated 2020-12-23, with a file datestamp of 2020-12-18.
Experiment type: EM
Resolution: 3.21 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Spike glycoprotein
Species: Human coronavirus 229E [TaxId:11137]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P15423
  - variant (641)
  - variant (680)
  - variant (764)
  - variant (774)
  - variant (870)
  - variant (936)
  - variant (970)
  - variant (1004)
Chain 'B':
Compound: Spike glycoprotein
Species: Human coronavirus 229E [TaxId:11137]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P15423
  - variant (641)
  - variant (680)
  - variant (764)
  - variant (774)
  - variant (870)
  - variant (936)
  - variant (970)
  - variant (1004)
Chain 'C':
Compound: Spike glycoprotein
Species: Human coronavirus 229E [TaxId:11137]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P15423
  - variant (641)
  - variant (680)
  - variant (764)
  - variant (774)
  - variant (870)
  - variant (936)
  - variant (970)
  - variant (1004)
Heterogens: BMA, MAN, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6ixaA (A:)
mfvllvayallhiagcqttnglntsysvcngcvgysenvfavesggyipsdfafnnwfll
tntssvvdgvvrsfqplllnclwsvsglrfttgfvyfngtgrgdckgfssdvlsdviryn
lnfeenlrrgtilfktsygvvvfyctnntlvsgdahipfgtvlgnfycfvnttignetts
afvgalpktvrefvisrtghfyingyryftlgnveavnfnvttaettdfctvalasyadv
lvnvsqtsianiiycnsvinrlrcdqlsfdvpdgfystspiqsvelpvsivslpvyhkht
fivlyvdfkpqsgggkcfncypagvnitlanfnetkgplcvdtshfttkyvavyanvgrw
sasintgncpfsfgkvnnfvkfgsvcfslkdipggcampivanwayskyytigslyvsws
dgdgitgvpqpvegvssfmnvtldkctkyniydvsgvgvirvsndtflngitytstsgnl
lgfkdvtkgtiysitpcnppdqlvvyqqavvgamlsenftsygfsnvvelpkffyasngt
ynctdavltyssfgvcadgsiiavqprnvsydsvsaivtanlsipsnwttsvqveylqit
stpivvdcstyvcngnvrcvellkqytsacktiedalrnsamlesadvsemltfdkkaft
lanvssfgdynlssvipslprsgsrvagrsaiedilfsklvtsglgtvdadykkctkgls
iadlacaqyyngimvlpgvadaermamytgsliggialggltsaasipfslaiqsrlnyv
alqtdvlqenqkilaasfnkamtnivdaftgvndaitqtsqalqtvatalnkiqdvvnqq
gnslnhltsqlrqnfqaisssiqaiydrldiiqadqqvdrlitgrlaalnvfvshtltky
tevrasrqlaqqkvnecvksqskrygfcgngthifslvnaapeglvflhtvllptqykdv
eawsglcvdgrngyvlrqpnlalykegnyyritsrimfepriptiadfvqiencnvtfvn
isrselqtivpeyidvnktlqelsyklpnytvpdlvveqynqtilnltseistlenksae
lnytvqklqtlidninstlvdlkwlnrvetyikwpw

Sequence, based on observed residues (ATOM records):

>6ixaA (A:)
ipsdfafnnwflltntssvvdgvvrsfqplllnclwsvsglrfttgfvyfngtgrgdckg
fssdvlsdvirynlnfeenlrrgtilfktsygvvvfyctnntlvsgdanfycfvnttign
ettsafvgalpktvrefvisrtghfyingyryftlgnveavnfnvttaettdfctvalas
yadvlvnvsqtsianiiycnsvinrlrcdqlsfdvpdgfystspiqsvelpvsivslpvy
hkhtfivlyvdfkpqsgggkcfncypagvnitlanfnetkgplcvdtshfttkyvavyan
vgrwsasintgncpfsfgkvnnfvkfgsvcfslkdipggcampivanwayskyytigsly
vswsdgdgitgvpqpvegvssfmnvtldkctkyniydvsgvgvirvsndtflngitytst
sgnllgfkdvtkgtiysitpcnppdqlvvyqqavvgamlsenftsygfsnvvelpkffya
sngtynctdavltyssfgvcadgsiiavqprnvsydsvsaivtanlsipsnwttsvqvey
lqitstpivvdcstyvcngnvrcvellkqytsacktiedalrnsamlesadvsemltfdk
kaftlanvssfgdynlssvipslprsgsrvagrsaiedilfskladykkctkglsiadla
caqyyngimvlpgvadaermamytgsliggialggltsaasipfslaiqsrlnyvalqtd
vlqenqkilaasfnkamtnivdaftsqalqtvatalnkiqdvvnqqgnslnhltsqlrqn
fqaisssiqaiydrldiiqadqqvdrlitgrlaalnvfvshtltkytevrasrqlaqqkv
necvksqskrygfcgngthifslvnaapeglvflhtvllptqykdveawsglcvdgrngy
vlrqpnlalykegnyyritsrimfepriptiadfvqiencnvtfvnisrselqtivpey

Chain 'B':
Sequence, based on SEQRES records:

>6ixaB (B:)
mfvllvayallhiagcqttnglntsysvcngcvgysenvfavesggyipsdfafnnwfll
tntssvvdgvvrsfqplllnclwsvsglrfttgfvyfngtgrgdckgfssdvlsdviryn
lnfeenlrrgtilfktsygvvvfyctnntlvsgdahipfgtvlgnfycfvnttignetts
afvgalpktvrefvisrtghfyingyryftlgnveavnfnvttaettdfctvalasyadv
lvnvsqtsianiiycnsvinrlrcdqlsfdvpdgfystspiqsvelpvsivslpvyhkht
fivlyvdfkpqsgggkcfncypagvnitlanfnetkgplcvdtshfttkyvavyanvgrw
sasintgncpfsfgkvnnfvkfgsvcfslkdipggcampivanwayskyytigslyvsws
dgdgitgvpqpvegvssfmnvtldkctkyniydvsgvgvirvsndtflngitytstsgnl
lgfkdvtkgtiysitpcnppdqlvvyqqavvgamlsenftsygfsnvvelpkffyasngt
ynctdavltyssfgvcadgsiiavqprnvsydsvsaivtanlsipsnwttsvqveylqit
stpivvdcstyvcngnvrcvellkqytsacktiedalrnsamlesadvsemltfdkkaft
lanvssfgdynlssvipslprsgsrvagrsaiedilfsklvtsglgtvdadykkctkgls
iadlacaqyyngimvlpgvadaermamytgsliggialggltsaasipfslaiqsrlnyv
alqtdvlqenqkilaasfnkamtnivdaftgvndaitqtsqalqtvatalnkiqdvvnqq
gnslnhltsqlrqnfqaisssiqaiydrldiiqadqqvdrlitgrlaalnvfvshtltky
tevrasrqlaqqkvnecvksqskrygfcgngthifslvnaapeglvflhtvllptqykdv
eawsglcvdgrngyvlrqpnlalykegnyyritsrimfepriptiadfvqiencnvtfvn
isrselqtivpeyidvnktlqelsyklpnytvpdlvveqynqtilnltseistlenksae
lnytvqklqtlidninstlvdlkwlnrvetyikwpw

Sequence, based on observed residues (ATOM records):

>6ixaB (B:)
ipsdfafnnwflltntssvvdgvvrsfqplllnclwsvsglrfttgfvyfngtgrgdckg
fssdvlsdvirynlnfeenlrrgtilfktsygvvvfyctnntlvsgdanfycfvnttign
ettsafvgalpktvrefvisrtghfyingyryftlgnveavnfnvttaettdfctvalas
yadvlvnvsqtsianiiycnsvinrlrcdqlsfdvpdgfystspiqsvelpvsivslpvy
hkhtfivlyvdfkpqsgggkcfncypagvnitlanfnetkgplcvdtshfttkyvavyan
vgrwsasintgncpfsfgkvnnfvkfgsvcfslkdipggcampivanwayskyytigsly
vswsdgdgitgvpqpvegvssfmnvtldkctkyniydvsgvgvirvsndtflngitytst
sgnllgfkdvtkgtiysitpcnppdqlvvyqqavvgamlsenftsygfsnvvelpkffya
sngtynctdavltyssfgvcadgsiiavqprnvsydsvsaivtanlsipsnwttsvqvey
lqitstpivvdcstyvcngnvrcvellkqytsacktiedalrnsamlesadvsemltfdk
kaftlanvssfgdynlssvipslprsgsrvagrsaiedilfskladykkctkglsiadla
caqyyngimvlpgvadaermamytgsliggialggltsaasipfslaiqsrlnyvalqtd
vlqenqkilaasfnkamtnivdaftsqalqtvatalnkiqdvvnqqgnslnhltsqlrqn
fqaisssiqaiydrldiiqadqqvdrlitgrlaalnvfvshtltkytevrasrqlaqqkv
necvksqskrygfcgngthifslvnaapeglvflhtvllptqykdveawsglcvdgrngy
vlrqpnlalykegnyyritsrimfepriptiadfvqiencnvtfvnisrselqtivpey

Chain 'C':
Sequence, based on SEQRES records:

>6ixaC (C:)
mfvllvayallhiagcqttnglntsysvcngcvgysenvfavesggyipsdfafnnwfll
tntssvvdgvvrsfqplllnclwsvsglrfttgfvyfngtgrgdckgfssdvlsdviryn
lnfeenlrrgtilfktsygvvvfyctnntlvsgdahipfgtvlgnfycfvnttignetts
afvgalpktvrefvisrtghfyingyryftlgnveavnfnvttaettdfctvalasyadv
lvnvsqtsianiiycnsvinrlrcdqlsfdvpdgfystspiqsvelpvsivslpvyhkht
fivlyvdfkpqsgggkcfncypagvnitlanfnetkgplcvdtshfttkyvavyanvgrw
sasintgncpfsfgkvnnfvkfgsvcfslkdipggcampivanwayskyytigslyvsws
dgdgitgvpqpvegvssfmnvtldkctkyniydvsgvgvirvsndtflngitytstsgnl
lgfkdvtkgtiysitpcnppdqlvvyqqavvgamlsenftsygfsnvvelpkffyasngt
ynctdavltyssfgvcadgsiiavqprnvsydsvsaivtanlsipsnwttsvqveylqit
stpivvdcstyvcngnvrcvellkqytsacktiedalrnsamlesadvsemltfdkkaft
lanvssfgdynlssvipslprsgsrvagrsaiedilfsklvtsglgtvdadykkctkgls
iadlacaqyyngimvlpgvadaermamytgsliggialggltsaasipfslaiqsrlnyv
alqtdvlqenqkilaasfnkamtnivdaftgvndaitqtsqalqtvatalnkiqdvvnqq
gnslnhltsqlrqnfqaisssiqaiydrldiiqadqqvdrlitgrlaalnvfvshtltky
tevrasrqlaqqkvnecvksqskrygfcgngthifslvnaapeglvflhtvllptqykdv
eawsglcvdgrngyvlrqpnlalykegnyyritsrimfepriptiadfvqiencnvtfvn
isrselqtivpeyidvnktlqelsyklpnytvpdlvveqynqtilnltseistlenksae
lnytvqklqtlidninstlvdlkwlnrvetyikwpw

Sequence, based on observed residues (ATOM records):

>6ixaC (C:)
ipsdfafnnwflltntssvvdgvvrsfqplllnclwsvsglrfttgfvyfngtgrgdckg
fssdvlsdvirynlnfeenlrrgtilfktsygvvvfyctnntlvsgdanfycfvnttign
ettsafvgalpktvrefvisrtghfyingyryftlgnveavnfnvttaettdfctvalas
yadvlvnvsqtsianiiycnsvinrlrcdqlsfdvpdgfystspiqsvelpvsivslpvy
hkhtfivlyvdfkpqsgggkcfncypagvnitlanfnetkgplcvdtshfttkyvavyan
vgrwsasintgncpfsfgkvnnfvkfgsvcfslkdipggcampivanwayskyytigsly
vswsdgdgitgvpqpvegvssfmnvtldkctkyniydvsgvgvirvsndtflngitytst
sgnllgfkdvtkgtiysitpcnppdqlvvyqqavvgamlsenftsygfsnvvelpkffya
sngtynctdavltyssfgvcadgsiiavqprnvsydsvsaivtanlsipsnwttsvqvey
lqitstpivvdcstyvcngnvrcvellkqytsacktiedalrnsamlesadvsemltfdk
kaftlanvssfgdynlssvipslprsgsrvagrsaiedilfskladykkctkglsiadla
caqyyngimvlpgvadaermamytgsliggialggltsaasipfslaiqsrlnyvalqtd
vlqenqkilaasfnkamtnivdaftsqalqtvatalnkiqdvvnqqgnslnhltsqlrqn
fqaisssiqaiydrldiiqadqqvdrlitgrlaalnvfvshtltkytevrasrqlaqqkv
necvksqskrygfcgngthifslvnaapeglvflhtvllptqykdveawsglcvdgrngy
vlrqpnlalykegnyyritsrimfepriptiadfvqiencnvtfvnisrselqtivpey