PDB entry 6iwr

View 6iwr on RCSB PDB site
Description: crystal structure of galnac-t7 with udp, galnac and mn2+
Deposited on 2018-12-06, released 2019-02-06
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: N-acetylgalactosaminyltransferase 7
    Species: Homo sapiens [TaxId:9606]
    Gene: GALNT7
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: N-acetylgalactosaminyltransferase 7
    Species: Homo sapiens [TaxId:9606]
    Gene: GALNT7
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: N-acetylgalactosaminyltransferase 7
    Species: Homo sapiens [TaxId:9606]
    Gene: GALNT7
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: N-acetylgalactosaminyltransferase 7
    Species: Homo sapiens [TaxId:9606]
    Gene: GALNT7
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: N-acetylgalactosaminyltransferase 7
    Species: Homo sapiens [TaxId:9606]
    Gene: GALNT7
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: N-acetylgalactosaminyltransferase 7
    Species: Homo sapiens [TaxId:9606]
    Gene: GALNT7
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, NAG, UDP, UD2, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iwrA (A:)
pgedrfkpvvpwphvegvevdlesirrinkakneqehhaggdsqkdimqrqyltfkpqtf
tyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasikefgfnmvas
dmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvikrtprkyla
eivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqkaklgqvliyl
dahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgyargawdwsm
lwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqiwggenfeis
ykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvevwwdeykdyf
yasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppknvdwgeirgf
etaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgadgskvmithc
nlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwemnnihsv

    Sequence, based on observed residues (ATOM records):
    >6iwrA (A:)
yltfkpqtftyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasik
efgfnmvasdmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvi
krtprkylaeivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqka
klgqvliyldahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgy
argawdwsmlwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqi
wggenfeisykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvev
wwdeykdyfyasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppkn
vdwgeirgfetaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgad
gskvmithcnlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwem
nnihsv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iwrB (B:)
pgedrfkpvvpwphvegvevdlesirrinkakneqehhaggdsqkdimqrqyltfkpqtf
tyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasikefgfnmvas
dmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvikrtprkyla
eivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqkaklgqvliyl
dahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgyargawdwsm
lwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqiwggenfeis
ykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvevwwdeykdyf
yasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppknvdwgeirgf
etaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgadgskvmithc
nlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwemnnihsv

    Sequence, based on observed residues (ATOM records):
    >6iwrB (B:)
yltfkpqtftyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasik
efgfnmvasdmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvi
krtprkylaeivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqka
klgqvliyldahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgy
argawdwsmlwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqi
wggenfeisykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvev
wwdeykdyfyasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppkn
vdwgeirgfetaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgad
gskvmithcnlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwem
nnihsv

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iwrC (C:)
pgedrfkpvvpwphvegvevdlesirrinkakneqehhaggdsqkdimqrqyltfkpqtf
tyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasikefgfnmvas
dmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvikrtprkyla
eivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqkaklgqvliyl
dahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgyargawdwsm
lwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqiwggenfeis
ykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvevwwdeykdyf
yasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppknvdwgeirgf
etaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgadgskvmithc
nlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwemnnihsv

    Sequence, based on observed residues (ATOM records):
    >6iwrC (C:)
yltfkpqtftyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasik
efgfnmvasdmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvi
krtprkylaeivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqka
klgqvliyldahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgy
argawdwsmlwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqi
wggenfeisykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvev
wwdeykdyfyasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppkn
vdwgeirgfetaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgad
gskvmithcnlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwem
nnihsv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iwrD (D:)
pgedrfkpvvpwphvegvevdlesirrinkakneqehhaggdsqkdimqrqyltfkpqtf
tyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasikefgfnmvas
dmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvikrtprkyla
eivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqkaklgqvliyl
dahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgyargawdwsm
lwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqiwggenfeis
ykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvevwwdeykdyf
yasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppknvdwgeirgf
etaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgadgskvmithc
nlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwemnnihsv

    Sequence, based on observed residues (ATOM records):
    >6iwrD (D:)
yltfkpqtftyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasik
efgfnmvasdmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvi
krtprkylaeivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqka
klgqvliyldahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgy
argawdwsmlwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqi
wggenfeisykiwqcggkllfvpcsrvghiyrlegwqgssptlknyvrvvevwwdeykdy
fyasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppknvdwgeirg
fetaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgadgskvmith
cnlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwemnnihsv

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6iwrE (E:)
pgedrfkpvvpwphvegvevdlesirrinkakneqehhaggdsqkdimqrqyltfkpqtf
tyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasikefgfnmvas
dmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvikrtprkyla
eivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqkaklgqvliyl
dahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgyargawdwsm
lwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqiwggenfeis
ykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvevwwdeykdyf
yasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppknvdwgeirgf
etaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgadgskvmithc
nlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwemnnihsv

    Sequence, based on observed residues (ATOM records):
    >6iwrE (E:)
yltfkpqtftyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasik
efgfnmvasdmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvi
krtprkylaeivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqka
klgqvliyldahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgy
argawdwsmlwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqi
wggenfeisykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvev
wwdeykdyfyasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppkn
vdwgeirgfetaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgad
gskvmithcnlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwem
nnihsv

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6iwrF (F:)
pgedrfkpvvpwphvegvevdlesirrinkakneqehhaggdsqkdimqrqyltfkpqtf
tyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasikefgfnmvas
dmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvikrtprkyla
eivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqkaklgqvliyl
dahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgyargawdwsm
lwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqiwggenfeis
ykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvevwwdeykdyf
yasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppknvdwgeirgf
etaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgadgskvmithc
nlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwemnnihsv

    Sequence, based on observed residues (ATOM records):
    >6iwrF (F:)
yltfkpqtftyhdpvlrpgilgnfepkepeppgvvggpgekakplvlgpefkqaiqasik
efgfnmvasdmisldrsvndlrqeeckywhydenlltssvvivfhnegwstlmrtvhsvi
krtprkylaeivliddfsnkehlkekldeyiklwnglvkvfrnerregliqarsigaqka
klgqvliyldahcevavnwyaplvapiskdrtictvplidvingntyeiipqgggdedgy
argawdwsmlwkrvpltpqekrlrktktepyrspamagglfaierefffelglydpglqi
wggenfeisykiwqcggkllfvpcsrvghiyrlegwqgnpppiyvgssptlknyvrvvev
wwdeykdyfyasrpesqalpygdiselkkfredhncksfkwfmeeiayditshyplppkn
vdwgeirgfetaycidsmgktnggfvelgpchrmggnqlfrineanqlmqydqcltkgad
gskvmithcnlnefkewqyfknlhrfthipsgkcldrsevlhqvfisncdsskttqkwem
nnihsv