PDB entry 6ivc

View 6ivc on RCSB PDB site
Description: the full length of tgev nsp1
Deposited on 2018-12-03, released 2019-08-07
The last revision was dated 2019-09-25, with a file datestamp of 2019-09-20.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.36 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: nsp1 protein
    Species: Transmissible gastroenteritis virus [TaxId:11149]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: nsp1 protein
    Species: Transmissible gastroenteritis virus [TaxId:11149]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: nsp1 protein
    Species: Transmissible gastroenteritis virus [TaxId:11149]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: nsp1 protein
    Species: Transmissible gastroenteritis virus [TaxId:11149]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A140EDJ9 (7-End)
      • initiating methionine (0)
      • expression tag (1-6)
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ivcA (A:)
mhhhhhhmsskqfkilvnedyqvnvpslpirdvlqeikycyrngfegyvfvpeycrdlvd
cdrkdhyvigvlgngvsdlkpvlltepsvmlqgfivrancngvledfdlkiartgr

    Sequence, based on observed residues (ATOM records):
    >6ivcA (A:)
msskqfkilvnedyqvnvpslpirdvlqeikycyrngfegyvfvpeycrdlvdcdrkdhy
vigvlgngvsdlkpvlltepsvmlqgfivrancngvledfdlkia

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ivcB (B:)
mhhhhhhmsskqfkilvnedyqvnvpslpirdvlqeikycyrngfegyvfvpeycrdlvd
cdrkdhyvigvlgngvsdlkpvlltepsvmlqgfivrancngvledfdlkiartgr

    Sequence, based on observed residues (ATOM records):
    >6ivcB (B:)
hhhhhmsskqfkilvnedyqvnvpslpirdvlqeikycyrngfegyvfvpeycrdlvdcd
rkdhyvigvlgngvsdlkpvlltepsvmlqgfivrancngvledfdlkia

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ivcE (E:)
mhhhhhhmsskqfkilvnedyqvnvpslpirdvlqeikycyrngfegyvfvpeycrdlvd
cdrkdhyvigvlgngvsdlkpvlltepsvmlqgfivrancngvledfdlkiartgr

    Sequence, based on observed residues (ATOM records):
    >6ivcE (E:)
sskqfkilvnedyqvnvpslpirdvlqeikycyrngfegyvfvpeycrdlvdcdrkdhyv
igvlgngvsdlkpvlltepsvmlqgfivrancngvledfdlkia

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ivcF (F:)
mhhhhhhmsskqfkilvnedyqvnvpslpirdvlqeikycyrngfegyvfvpeycrdlvd
cdrkdhyvigvlgngvsdlkpvlltepsvmlqgfivrancngvledfdlkiartgr

    Sequence, based on observed residues (ATOM records):
    >6ivcF (F:)
mhhhhhhmsskqfkilvnedyqvnvpslpirdvlqeikycyrngfegyvfvpeycrdlvd
cdrkdhyvigvlgngvsdlkpvlltepsvmlqgfivrancngvledfdlkiart