PDB entry 6iut

View 6iut on RCSB PDB site
Description: Crystal structure of influenza A virus H5 hemagglutinin globular head in complex with the Fab of antibody AVFluIgG01
Class: immune system
Keywords: influenza virus, HPAI, H5N1, neutralizing antibody, epitope, major vulnerable site, vaccine development, IMMUNE SYSTEM
Deposited on 2018-11-30, released 2019-01-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus (A/Anhui/1/2005(H5N1)) [TaxId:370810]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: AVFluIgG01 Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IUT (0-218)
    Domains in SCOPe 2.08: d6iuth_
  • Chain 'L':
    Compound: AVFluIgG01 Light Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IUT (0-End)
    Domains in SCOPe 2.08: d6iutl1, d6iutl2
  • Heterogens: NAG, HOH

PDB Chain Sequences:

  • Chain 'A':
    No sequence available.

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6iutH (H:)
vqlqesgpglvkpsetlsltctvsggsinsyywswirqppgkglewigylfdsgstkynp
sltsrvtisvdtsknqfslklssvtaadtavyycargfwgldgfdiwgqgttvtvssast
kgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssgly
slssvvtvpssslgtqtyicnvnhkpsntkvdkkvepks

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6iutL (L:)
avltqpasvsgspgqsitisctgtssdvgdynyvswyqqhpgkaptlmiydvnkrpsgds
nrfsgsksgntasltisglqaedeadyycssytssntwvfgggtkleikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6iutL (L:)
avltqpasvsgspgqsitisctgtssdvgdynyvswyqqhpgkaptlmiydvnkrpsgds
nrfsgsksgntasltisglqaedeadyycssytssntwvfgggtkleikrtvaapsvfif
ppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstyslsst
ltlskadyekhkvyacevthqglsspvtksfnrg