PDB entry 6iuk

View 6iuk on RCSB PDB site
Description: cryo-em structure of murine norovirus capsid
Deposited on 2018-11-28, released 2020-02-26
The last revision was dated 2020-07-22, with a file datestamp of 2020-07-17.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein VP1
    Species: Murine norovirus GV/NIH-2410/2005/USA [TaxId:1028322]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Major capsid protein VP1
    Species: Murine norovirus GV/NIH-2410/2005/USA [TaxId:1028322]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Major capsid protein VP1
    Species: Murine norovirus GV/NIH-2410/2005/USA [TaxId:1028322]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iukA (A:)
mrmsdgaapkangseasgqdlvptaveqavpiqpvagaalaapaagqinqidpwifqnfv
qcplgefsisprntpgeilfdlalgpglnpylahlsamytgwvgnmevqlvlagnaftag
kvvvalvppyfpkgslttaqitcfphvmcdvrtlepiqlplldvrrvlwhatqdqeesmr
lvcmlytplrtnspgdesfvvsgrllskpaadfnfvyltppiertiyrmvdlpvlqprlc
tharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvscfaaeaayefqsg
igevatftlieqdgsayvpgdraaplgypdfsgqleievqtettkkgeklkvttfemilg
pttnvdqvpyqgrvyasltaaasldlvdgrvravprsvygfqdvvpeyndgllvplappi
gpflpgevllrfrtymrqidstdaaaeaidcalpqefvswfasnaftvqsealllryrnt
ltgqllfecklysegyialsysgsgpltfptdgffevvswvprlyqlasvgslatgrtlk
q

    Sequence, based on observed residues (ATOM records):
    >6iukA (A:)
qdlvptaveqavpiqpvagaalaapaagqinqidpwifqnfvqcplgefsisprntpgei
lfdlalgpglnpylahlsamytgwvgnmevqlvlagnaftagkvvvalvppyfpkgsltt
aqitcfphvmcdvrtlepiqlplldvrrvlwhatqdqeesmrlvcmlytplrtnspgdes
fvvsgrllskpaadfnfvyltppiertiyrmvdlpvlqprlctharwpapiygllvdpsl
psnpqwqngrvhvdgtllgttpvsgswvscfaaeaayefqsgigevatftlieqdgsayv
pgdraaplgypdfsgqleievqtettkkgeklkvttfemilgpttnvdqvpyqgrvyasl
taaasldlvdgrvravprsvygfqdvvpeyndgllvplappigpflpgevllrfrtymrq
idstdaaaeaidcalpqefvswfasnaftvqsealllryrntltgqllfecklysegyia
lsysgsgpltfptdgffevvswvprlyqlasvg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iukB (B:)
mrmsdgaapkangseasgqdlvptaveqavpiqpvagaalaapaagqinqidpwifqnfv
qcplgefsisprntpgeilfdlalgpglnpylahlsamytgwvgnmevqlvlagnaftag
kvvvalvppyfpkgslttaqitcfphvmcdvrtlepiqlplldvrrvlwhatqdqeesmr
lvcmlytplrtnspgdesfvvsgrllskpaadfnfvyltppiertiyrmvdlpvlqprlc
tharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvscfaaeaayefqsg
igevatftlieqdgsayvpgdraaplgypdfsgqleievqtettkkgeklkvttfemilg
pttnvdqvpyqgrvyasltaaasldlvdgrvravprsvygfqdvvpeyndgllvplappi
gpflpgevllrfrtymrqidstdaaaeaidcalpqefvswfasnaftvqsealllryrnt
ltgqllfecklysegyialsysgsgpltfptdgffevvswvprlyqlasvgslatgrtlk
q

    Sequence, based on observed residues (ATOM records):
    >6iukB (B:)
asgqdlvptaveqavpiqpvagaalaapaagqinqidpwifqnfvqcplgefsisprntp
geilfdlalgpglnpylahlsamytgwvgnmevqlvlagnaftagkvvvalvppyfpkgs
lttaqitcfphvmcdvrtlepiqlplldvrrvlwhatqdqeesmrlvcmlytplrtnspg
desfvvsgrllskpaadfnfvyltppiertiyrmvdlpvlqprlctharwpapiygllvd
pslpsnpqwqngrvhvdgtllgttpvsgswvscfaaeaayefqsgigevatftlieqdgs
ayvpgdraaplgypdfsgqleievqtettkkgeklkvttfemilgpttnvdqvpyqgrvy
asltaaasldlvdgrvravprsvygfqdvvpeyndgllvplappigpflpgevllrfrty
mrqidstdaaaeaidcalpqefvswfasnaftvqsealllryrntltgqllfecklyseg
yialsysgsgpltfptdgffevvswvprlyqlasvg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iukC (C:)
mrmsdgaapkangseasgqdlvptaveqavpiqpvagaalaapaagqinqidpwifqnfv
qcplgefsisprntpgeilfdlalgpglnpylahlsamytgwvgnmevqlvlagnaftag
kvvvalvppyfpkgslttaqitcfphvmcdvrtlepiqlplldvrrvlwhatqdqeesmr
lvcmlytplrtnspgdesfvvsgrllskpaadfnfvyltppiertiyrmvdlpvlqprlc
tharwpapiygllvdpslpsnpqwqngrvhvdgtllgttpvsgswvscfaaeaayefqsg
igevatftlieqdgsayvpgdraaplgypdfsgqleievqtettkkgeklkvttfemilg
pttnvdqvpyqgrvyasltaaasldlvdgrvravprsvygfqdvvpeyndgllvplappi
gpflpgevllrfrtymrqidstdaaaeaidcalpqefvswfasnaftvqsealllryrnt
ltgqllfecklysegyialsysgsgpltfptdgffevvswvprlyqlasvgslatgrtlk
q

    Sequence, based on observed residues (ATOM records):
    >6iukC (C:)
vpiqpvagaalaapaagqinqidpwifqnfvqcplgefsisprntpgeilfdlalgpgln
pylahlsamytgwvgnmevqlvlagnaftagkvvvalvppyfpkgslttaqitcfphvmc
dvrtlepiqlplldvrrvlwhatqdqeesmrlvcmlytplrtnspgdesfvvsgrllskp
aadfnfvyltppiertiyrmvdlpvlqprlctharwpapiygllvdpslpsnpqwqngrv
hvdgtllgttpvsgswvscfaaeaayefqsgigevatftlieqdgsayvpgdraaplgyp
dfsgqleievqtettkkgeklkvttfemilgpttnvdqvpyqgrvyasltaaasldlvdg
rvravprsvygfqdvvpeyndgllvplappigpflpgevllrfrtymrqidstdaaaeai
dcalpqefvswfasnaftvqsealllryrntltgqllfecklysegyialsysgsgpltf
ptdgffevvswvprlyqlasvg