PDB entry 6iud

View 6iud on RCSB PDB site
Description: structure of helicobacter pylori soj-adp complex bound to dna
Deposited on 2018-11-28, released 2019-02-13
The last revision was dated 2019-03-13, with a file datestamp of 2019-03-08.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: SpoOJ regulator (Soj)
    Species: Helicobacter pylori (strain ATCC 700392 / 26695) [TaxId:85962]
    Gene: HP_1139
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: SpoOJ regulator (Soj)
    Species: Helicobacter pylori (strain ATCC 700392 / 26695) [TaxId:85962]
    Gene: HP_1139
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: SpoOJ regulator (Soj)
    Species: Helicobacter pylori (strain ATCC 700392 / 26695) [TaxId:85962]
    Gene: HP_1139
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: SpoOJ regulator (Soj)
    Species: Helicobacter pylori (strain ATCC 700392 / 26695) [TaxId:85962]
    Gene: HP_1139
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: DNA (5'-d(p*tp*cp*cp*cp*tp*gp*tp*tp*tp*cp*ap*cp*gp*tp*gp*gp*ap*ap*cp*ap*cp*cp*cp*t)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: DNA (5'-d(p*ap*gp*gp*gp*tp*gp*tp*tp*cp*cp*ap*cp*gp*tp*gp*ap*ap*ap*cp*ap*gp*gp*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ADP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iudA (A:)
mrgshhhhhhgsmmseiiavanqkggvgktttavnlaaslavhekkillidfdpqanats
slgfrrdkidydiyhvligrkqisqvilktqmpfldlvpsnlglagfektfydsqdenkr
gelmlknalesvvglydyiiidsppalgpltinslsaahsviipiqceffalegtkllln
tirmlqkstnpklkirgflptmhvpqlnltkgvlaelfkyfdseffrdsatgeyimipks
vklaespsfgkpillydiksngsiayqklaqsilqg

    Sequence, based on observed residues (ATOM records):
    >6iudA (A:)
mmseiiavanqkggvgktttavnlaaslavhekkillidfdpqanatsslgfrrdkidyd
iyhvligrkqisqvilktqmpfldlvpsnlglagfektfydsqdenkrgelmlknalesv
vglydyiiidsppalgpltinslsaahsviipiqceffalegtklllntirmlqkstnpk
lkirgflptmhvpqlnltkgvlaelfkyfdseffrdsatgeyimipksvklaespsfgkp
illydiksngsiayqklaqsilqg

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iudB (B:)
mrgshhhhhhgsmmseiiavanqkggvgktttavnlaaslavhekkillidfdpqanats
slgfrrdkidydiyhvligrkqisqvilktqmpfldlvpsnlglagfektfydsqdenkr
gelmlknalesvvglydyiiidsppalgpltinslsaahsviipiqceffalegtkllln
tirmlqkstnpklkirgflptmhvpqlnltkgvlaelfkyfdseffrdsatgeyimipks
vklaespsfgkpillydiksngsiayqklaqsilqg

    Sequence, based on observed residues (ATOM records):
    >6iudB (B:)
mmseiiavanqkggvgktttavnlaaslavhekkillidfdpqanatsslgfrrdkidyd
iyhvligrkqisqvilktqmpfldlvpsnlglagfektfydsqdenkrgelmlknalesv
vglydyiiidsppalgpltinslsaahsviipiqceffalegtklllntirmlqkstnpk
lkirgflptmhvpqlnltkgvlaelfkyfdseffrdsatgeyimipksvklaespsfgkp
illydiksngsiayqklaqsilqg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iudC (C:)
mrgshhhhhhgsmmseiiavanqkggvgktttavnlaaslavhekkillidfdpqanats
slgfrrdkidydiyhvligrkqisqvilktqmpfldlvpsnlglagfektfydsqdenkr
gelmlknalesvvglydyiiidsppalgpltinslsaahsviipiqceffalegtkllln
tirmlqkstnpklkirgflptmhvpqlnltkgvlaelfkyfdseffrdsatgeyimipks
vklaespsfgkpillydiksngsiayqklaqsilqg

    Sequence, based on observed residues (ATOM records):
    >6iudC (C:)
mmseiiavanqkggvgktttavnlaaslavhekkillidfdpqanatsslgfrrdkidyd
iyhvligrkqisqvilktqmpfldlvpsnlglagfektfydsqdenkrgelmlknalesv
vglydyiiidsppalgpltinslsaahsviipiqceffalegtklllntirmlqkstnpk
lkirgflptmhvpqlnltkgvlaelfkyfdseffrdsatgeyimipksvklaespsfgkp
illydiksngsiayqklaqsilqg

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iudD (D:)
mrgshhhhhhgsmmseiiavanqkggvgktttavnlaaslavhekkillidfdpqanats
slgfrrdkidydiyhvligrkqisqvilktqmpfldlvpsnlglagfektfydsqdenkr
gelmlknalesvvglydyiiidsppalgpltinslsaahsviipiqceffalegtkllln
tirmlqkstnpklkirgflptmhvpqlnltkgvlaelfkyfdseffrdsatgeyimipks
vklaespsfgkpillydiksngsiayqklaqsilqg

    Sequence, based on observed residues (ATOM records):
    >6iudD (D:)
mmseiiavanqkggvgktttavnlaaslavhekkillidfdpqanatsslgfrrdkidyd
iyhvligrkqisqvilktqmpfldlvpsnlglagfektfydsqdenkrgelmlknalesv
vglydyiiidsppalgpltinslsaahsviipiqceffalegtklllntirmlqkstnpk
lkirgflptmhvpqlnltkgvlaelfkyfdseffrdsatgeyimipksvklaespsfgkp
illydiksngsiayqklaqsilqg

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.