PDB entry 6itg

View 6itg on RCSB PDB site
Description: a new alginate lyase (pl6) from vibrio splendidus ou02
Deposited on 2018-11-23, released 2019-05-01
The last revision was dated 2019-05-15, with a file datestamp of 2019-05-10.
Experiment type: XRAY
Resolution: 1.42 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alginate lyase
    Species: Vibrio splendidus [TaxId:29497]
    Gene: BTO12_02510
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2S7V3I3 (Start-535)
      • conflict (49)
      • conflict (65)
      • conflict (114)
      • conflict (219)
  • Chain 'B':
    Compound: Alginate lyase
    Species: Vibrio splendidus [TaxId:29497]
    Gene: BTO12_02510
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2S7V3I3 (Start-535)
      • conflict (49)
      • conflict (65)
      • conflict (114)
      • conflict (219)
  • Heterogens: GOL, MLI, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6itgA (A:)
gppdlgtddddkamadiascttqektapvisvaeqavpsiseidrsyllssdrltevdgn
tldvaseeqvaalkaqfenlkdgdevvipngkyanlgqvtitandvtiraeqagaawltg
liqfelkgdditldglvfteggpnerfgavrmmgngntlqnstfyyfnhdytyepderrs
eypkylwvslwgkdgkvinnrfegkqkrgtligvqkddtpdnhliannifmdqkpnqfne
fdikeairyngnsweairigdskssqwdssskfvnnlmidmdgerelisiksgdntisgn
tifqsaalislrhgkgntvennmilgnekrltggiriydedhvirnnyiantrgrdgvie
gnadlrggivintgiidvangeqldqsvkgkelnkqwtpknitiennslvdtewgivygn
qshrvslfnnaevegiyagvdiafkhnvvdnsqtpefvsvrathdfplvgatytdetyvg
qvtdseliesysvelpkvtvenglnayqgegadvsklsvvtaetagpdyvlenttk

    Sequence, based on observed residues (ATOM records):
    >6itgA (A:)
psiseidrsyllssdrltevdgntldvaseeqvaalkaqfenlkdgdevvipngkyanlg
qvtitandvtiraeqagaawltgliqfelkgdditldglvfteggpnerfgavrmmgngn
tlqnstfyyfnhdytyepderrseypkylwvslwgkdgkvinnrfegkqkrgtligvqkd
dtpdnhliannifmdqkpnqfnefdikeairyngnsweairigdskssqwdssskfvnnl
midmdgerelisiksgdntisgntifqsaalislrhgkgntvennmilgnekrltggiri
ydedhvirnnyiantrgrdgviegnadlrggivintgiidvangeqldqsvkgkelnkqw
tpknitiennslvdtewgivygnqshrvslfnnaevegiyagvdiafkhnvvdnsqtpef
vsvrathdfplvgatytdetyvgqvtdseliesysvelpkvtvenglnayqgegadvskl
svvtaetagpdyvlenttk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6itgB (B:)
gppdlgtddddkamadiascttqektapvisvaeqavpsiseidrsyllssdrltevdgn
tldvaseeqvaalkaqfenlkdgdevvipngkyanlgqvtitandvtiraeqagaawltg
liqfelkgdditldglvfteggpnerfgavrmmgngntlqnstfyyfnhdytyepderrs
eypkylwvslwgkdgkvinnrfegkqkrgtligvqkddtpdnhliannifmdqkpnqfne
fdikeairyngnsweairigdskssqwdssskfvnnlmidmdgerelisiksgdntisgn
tifqsaalislrhgkgntvennmilgnekrltggiriydedhvirnnyiantrgrdgvie
gnadlrggivintgiidvangeqldqsvkgkelnkqwtpknitiennslvdtewgivygn
qshrvslfnnaevegiyagvdiafkhnvvdnsqtpefvsvrathdfplvgatytdetyvg
qvtdseliesysvelpkvtvenglnayqgegadvsklsvvtaetagpdyvlenttk

    Sequence, based on observed residues (ATOM records):
    >6itgB (B:)
psiseidrsyllssdrltevdgntldvaseeqvaalkaqfenlkdgdevvipngkyanlg
qvtitandvtiraeqagaawltgliqfelkgdditldglvfteggpnerfgavrmmgngn
tlqnstfyyfnhdytyepderrseypkylwvslwgkdgkvinnrfegkqkrgtligvqkd
dtpdnhliannifmdqkpnqfnefdikeairyngnsweairigdskssqwdssskfvnnl
midmdgerelisiksgdntisgntifqsaalislrhgkgntvennmilgnekrltggiri
ydedhvirnnyiantrgrdgviegnadlrggivintgiidvangeqldqsvkgkelnkqw
tpknitiennslvdtewgivygnqshrvslfnnaevegiyagvdiafkhnvvdnsqtpef
vsvrathdfplvgatytdetyvgqvtdseliesysvelpkvtvenglnayqgegadvskl
svvtaetagpdyvlenttk