PDB entry 6ite

View 6ite on RCSB PDB site
Description: crystal structure of group a streptococcal surface dehydrogenase (sdh)
Deposited on 2018-11-21, released 2019-09-25
The last revision was dated 2019-09-25, with a file datestamp of 2019-09-20.
Experiment type: XRAY
Resolution: 1.74 Å
R-factor: N/A
AEROSPACI score: 0.39 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'O':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Streptococcus pyogenes [TaxId:1314]
    Gene: gap, gapA, plr
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C0G6 (6-341)
      • expression tag (1-5)
  • Chain 'P':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Streptococcus pyogenes [TaxId:1314]
    Gene: gap, gapA, plr
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0C0G6 (6-341)
      • expression tag (3-5)
  • Chain 'Q':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Streptococcus pyogenes [TaxId:1314]
    Gene: gap, gapA, plr
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Streptococcus pyogenes [TaxId:1314]
    Gene: gap, gapA, plr
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAD, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6iteO (O:)
hhhhhhmvvkvgingfgrigrlafrriqniegvevtrindltdpnmlahllkydttqgrf
dgtvevkeggfevngnfikvsaerdpenidwatdgveivleatgffakkeaaekhlhang
akkvvitapggndvktvvfntnhdildgtetvisgascttnclapmakalhdafgiqkgl
mttihaytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaq
rvpvptgsvtelvvtldknvsvdeinsamkaasndsfgytedpivssdivgvsygslfda
tqtkvmevdgsqlvkvvswydnemsytaqlvrtleyfakiak

    Sequence, based on observed residues (ATOM records):
    >6iteO (O:)
hhhhhmvvkvgingfgrigrlafrriqniegvevtrindltdpnmlahllkydttqgrfd
gtvevkeggfevngnfikvsaerdpenidwatdgveivleatgffakkeaaekhlhanga
kkvvitapggndvktvvfntnhdildgtetvisgascttnclapmakalhdafgiqkglm
ttihaytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqr
vpvptgsvtelvvtldknvsvdeinsamkaasndsfgytedpivssdivgvsygslfdat
qtkvmevdgsqlvkvvswydnemsytaqlvrtleyfakiak

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6iteP (P:)
hhhhhhmvvkvgingfgrigrlafrriqniegvevtrindltdpnmlahllkydttqgrf
dgtvevkeggfevngnfikvsaerdpenidwatdgveivleatgffakkeaaekhlhang
akkvvitapggndvktvvfntnhdildgtetvisgascttnclapmakalhdafgiqkgl
mttihaytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaq
rvpvptgsvtelvvtldknvsvdeinsamkaasndsfgytedpivssdivgvsygslfda
tqtkvmevdgsqlvkvvswydnemsytaqlvrtleyfakiak

    Sequence, based on observed residues (ATOM records):
    >6iteP (P:)
hhhmvvkvgingfgrigrlafrriqniegvevtrindltdpnmlahllkydttqgrfdgt
vevkeggfevngnfikvsaerdpenidwatdgveivleatgffakkeaaekhlhangakk
vvitapggndvktvvfntnhdildgtetvisgascttnclapmakalhdafgiqkglmtt
ihaytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvp
vptgsvtelvvtldknvsvdeinsamkaasndsfgytedpivssdivgvsygslfdatqt
kvmevdgsqlvkvvswydnemsytaqlvrtleyfakiak

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6iteQ (Q:)
hhhhhhmvvkvgingfgrigrlafrriqniegvevtrindltdpnmlahllkydttqgrf
dgtvevkeggfevngnfikvsaerdpenidwatdgveivleatgffakkeaaekhlhang
akkvvitapggndvktvvfntnhdildgtetvisgascttnclapmakalhdafgiqkgl
mttihaytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaq
rvpvptgsvtelvvtldknvsvdeinsamkaasndsfgytedpivssdivgvsygslfda
tqtkvmevdgsqlvkvvswydnemsytaqlvrtleyfakiak

    Sequence, based on observed residues (ATOM records):
    >6iteQ (Q:)
mvvkvgingfgrigrlafrriqniegvevtrindltdpnmlahllkydttqgrfdgtvev
keggfevngnfikvsaerdpenidwatdgveivleatgffakkeaaekhlhangakkvvi
tapggndvktvvfntnhdildgtetvisgascttnclapmakalhdafgiqkglmttiha
ytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvpt
gsvtelvvtldknvsvdeinsamkaasndsfgytedpivssdivgvsygslfdatqtkvm
evdgsqlvkvvswydnemsytaqlvrtleyfakiak

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6iteR (R:)
hhhhhhmvvkvgingfgrigrlafrriqniegvevtrindltdpnmlahllkydttqgrf
dgtvevkeggfevngnfikvsaerdpenidwatdgveivleatgffakkeaaekhlhang
akkvvitapggndvktvvfntnhdildgtetvisgascttnclapmakalhdafgiqkgl
mttihaytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaq
rvpvptgsvtelvvtldknvsvdeinsamkaasndsfgytedpivssdivgvsygslfda
tqtkvmevdgsqlvkvvswydnemsytaqlvrtleyfakiak

    Sequence, based on observed residues (ATOM records):
    >6iteR (R:)
mvvkvgingfgrigrlafrriqniegvevtrindltdpnmlahllkydttqgrfdgtvev
keggfevngnfikvsaerdpenidwatdgveivleatgffakkeaaekhlhangakkvvi
tapggndvktvvfntnhdildgtetvisgascttnclapmakalhdafgiqkglmttiha
ytgdqmildgphrggdlrraragaanivpnstgaakaiglvipelngkldgaaqrvpvpt
gsvtelvvtldknvsvdeinsamkaasndsfgytedpivssdivgvsygslfdatqtkvm
evdgsqlvkvvswydnemsytaqlvrtleyfakiak