PDB entry 6is5

View 6is5 on RCSB PDB site
Description: p domain of gii.3-tv24 with a-tetrasaccharide complex
Deposited on 2018-11-15, released 2019-11-20
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VP1 capsid protein
    Species: Minireovirus [TaxId:194422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: VP1 capsid protein
    Species: Minireovirus [TaxId:194422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: VP1 capsid protein
    Species: Minireovirus [TaxId:194422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: VP1 capsid protein
    Species: Minireovirus [TaxId:194422]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6is5A (A:)
    gplgssktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgtt
    qllpsqicafrgtltrstsrasdqadtptprlfnyywhiqldnlngtpydpaedipaplg
    tpdfrgkvfgvasqrnpdsttraheakvdttsgrftpklgsleittesddfdpnqptkft
    pvgvgvdneaefqqwslpnysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngv
    ldclvpqewvqhfyqesapaqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspit
    vppngyfrfeswvnpfytlapmgtgng
    

    Sequence, based on observed residues (ATOM records):
    >6is5A (A:)
    tkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgttqllpsqi
    cafrgtltrslfnyywhiqldnlngtpydpaedipaplgtpdfrgkvfgvasqrnpdstt
    raheakvdttsgrftpklgsleittesddfdpnqptkftpvgvgvdneaefqqwslpnys
    gqfthnmnlapavapnfpgeqllffrsqlpssggrsngvldclvpqewvqhfyqesapaq
    tqvalvryvnpdtgrvlfeaklhklgfmtiakngdspitvppngyfrfeswvnpfytlap
    m
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6is5B (B:)
    gplgssktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgtt
    qllpsqicafrgtltrstsrasdqadtptprlfnyywhiqldnlngtpydpaedipaplg
    tpdfrgkvfgvasqrnpdsttraheakvdttsgrftpklgsleittesddfdpnqptkft
    pvgvgvdneaefqqwslpnysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngv
    ldclvpqewvqhfyqesapaqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspit
    vppngyfrfeswvnpfytlapmgtgng
    

    Sequence, based on observed residues (ATOM records):
    >6is5B (B:)
    sktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgttqllps
    qicafrgtltrstlfnyywhiqldnlngtpydpaedipaplgtpdfrgkvfgvasqrnpd
    sttraheakvdttsgrftpklgsleittesddfdpnqptkftpvgvgvdneaefqqwslp
    nysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngvldclvpqewvqhfyqesa
    paqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspitvppngyfrfeswvnpfyt
    lapm
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6is5C (C:)
    gplgssktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgtt
    qllpsqicafrgtltrstsrasdqadtptprlfnyywhiqldnlngtpydpaedipaplg
    tpdfrgkvfgvasqrnpdsttraheakvdttsgrftpklgsleittesddfdpnqptkft
    pvgvgvdneaefqqwslpnysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngv
    ldclvpqewvqhfyqesapaqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspit
    vppngyfrfeswvnpfytlapmgtgng
    

    Sequence, based on observed residues (ATOM records):
    >6is5C (C:)
    tkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgttqllpsqi
    cafrgtltrslfnyywhiqldnlngtpydpaedipaplgtpdfrgkvfgvasqrnpdstt
    raheakvdttsgrftpklgsleittesddfdpnqptkftpvgvgvdneaefqqwslpnys
    gqfthnmnlapavapnfpgeqllffrsqlpssggrsngvldclvpqewvqhfyqesapaq
    tqvalvryvnpdtgrvlfeaklhklgfmtiakngdspitvppngyfrfeswvnpfytlap
    m
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6is5D (D:)
    gplgssktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgtt
    qllpsqicafrgtltrstsrasdqadtptprlfnyywhiqldnlngtpydpaedipaplg
    tpdfrgkvfgvasqrnpdsttraheakvdttsgrftpklgsleittesddfdpnqptkft
    pvgvgvdneaefqqwslpnysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngv
    ldclvpqewvqhfyqesapaqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspit
    vppngyfrfeswvnpfytlapmgtgng
    

    Sequence, based on observed residues (ATOM records):
    >6is5D (D:)
    ktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgttqllpsq
    icafrgtltrstlfnyywhiqldnlngtpydpaedipaplgtpdfrgkvfgvasqrnpds
    ttraheakvdttsgrftpklgsleittesddfdpnqptkftpvgvgvdneaefqqwslpn
    ysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngvldclvpqewvqhfyqesap
    aqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspitvppngyfrfeswvnpfytl
    apm