PDB entry 6iro

View 6iro on RCSB PDB site
Description: the crosslinked complex of iswi-nucleosome in the adp-bound state
Deposited on 2018-11-13, released 2019-04-03
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: histone h3
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18002543mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h2aj, LOC494591, XELAEV_18003602mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Histone H2B 1.1
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02281
      • conflict (28)
  • Chain 'E':
    Compound: histone h3
    Species: Xenopus laevis [TaxId:8355]
    Gene: XELAEV_18002543mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: histone h4
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: histone h2a
    Species: Xenopus laevis [TaxId:8355]
    Gene: hist1h2aj, LOC494591, XELAEV_18003602mg
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Histone H2B 1.1
    Species: Xenopus laevis [TaxId:8355]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P02281
      • conflict (28)
  • Chain 'I':
    Compound: DNA (167-mer)
    Species: Escherichia coli K-12 [TaxId:83333]
  • Chain 'J':
    Compound: DNA (167-mer)
    Species: Escherichia coli K-12 [TaxId:83333]
  • Chain 'L':
    Compound: ISWI chromatin-remodeling complex ATPase ISW1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: ISW1, YBR245C, YBR1633
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38144
      • engineered mutation (414)
  • Heterogens: ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iroA (A:)
    artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
    lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
    pkdiqlarrirgera
    

    Sequence, based on observed residues (ATOM records):
    >6iroA (A:)
    kphryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeas
    eaylvalfedtnlcaihakrvtimpkdiqlarrirger
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iroB (B:)
    sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
    flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
    

    Sequence, based on observed residues (ATOM records):
    >6iroB (B:)
    akrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyte
    hakrktvtamdvvyalkrqgrtlygfg
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iroC (C:)
    sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
    eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
    essksaksk
    

    Sequence, based on observed residues (ATOM records):
    >6iroC (C:)
    akaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaar
    dnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iroD (D:)
    aksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskamsimn
    sfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts
    ak
    

    Sequence, based on observed residues (ATOM records):
    >6iroD (D:)
    trkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstits
    reiqtavrlllpgelakhavsegtkavtkytsa
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6iroE (E:)
    artkqtarkstggkaprkqlatkaarksapatggvkkphryrpgtvalreirryqkstel
    lirklpfqrlvreiaqdfktdlrfqssavmalqeaseaylvalfedtnlcaihakrvtim
    pkdiqlarrirgera
    

    Sequence, based on observed residues (ATOM records):
    >6iroE (E:)
    ryrpgtvalreirryqkstellirklpfqrlvreiaqdfktdlrfqssavmalqeaseay
    lvalfedtnlcaihakrvtimpkdiqlarrirger
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6iroF (F:)
    sgrgkggkglgkggakrhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkv
    flenvirdavtytehakrktvtamdvvyalkrqgrtlygfgg
    

    Sequence, based on observed residues (ATOM records):
    >6iroF (F:)
    rhrkvlrdniqgitkpairrlarrggvkrisgliyeetrgvlkvflenvirdavtyteha
    krktvtamdvvyalkrqgrtlygfgg
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6iroG (G:)
    sgrgkqggktrakaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleylta
    eilelagnaardnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpkkt
    essksaksk
    

    Sequence, based on observed residues (ATOM records):
    >6iroG (G:)
    akaktrssraglqfpvgrvhrllrkgnyaervgagapvylaavleyltaeilelagnaar
    dnkktriiprhlqlavrndeelnkllgrvtiaqggvlpniqsvllpk
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6iroH (H:)
    aksapapkkgskkavtktqkkdgkkrrktrkesyaiyvykvlkqvhpdtgisskamsimn
    sfvndvferiageasrlahynkrstitsreiqtavrlllpgelakhavsegtkavtkyts
    ak
    

    Sequence, based on observed residues (ATOM records):
    >6iroH (H:)
    trkesyaiyvykvlkqvhpdtgisskamsimnsfvndvferiageasrlahynkrstits
    reiqtavrlllpgelakhavsegtkavtkytsa
    

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6iroL (L:)
    enlkpfqvglpphdpesnkkryllkdangkkfdlegttkrfehllslsglfkhfieskaa
    kdpkfrqvldvleenkangkgkgkhqdvrrrkteheedaellkeedsdddesiefqfres
    payvngqlrpyqiqgvnwlvslhknkiagilademglgktlqtisflgylryiekipgpf
    lviapkstlnnwlreinrwtpdvnafilqgdkeeraeliqkkllgcdfdvviasyeiiir
    eksplkkinweyiiideahrikneesmlsqvlreftsrnrllitgtplqnnlhelwalln
    fllpdifsdaqdfddwfssesteedqdkivkqlhtvlqpfllrriksdvetsllpkkeln
    lyvgmssmqkkwykkilekdldavngsngskesktrllnimmqlrkccnhpylfkgaepg
    ppyttdehlvynaaklqvldkllkklkeegsrvlifsqmsrlldiledycyfrnyeycri
    dgstahedriqaiddynapdskkfvfllttragglginltsadvvvlydsdwnpqadlqa
    mdrahrigqkkqvkvfrlvtdnsveekileratqklrldqlviqqnrtslkkkenkadsk
    dallsmiqhgaadvfksgtstgsagtpepgsgekgddidldelllksenktkslnakyet
    lglddlqkfnqdsayewngqdfkkkiqrdiisplllnptkrerkenysidnyykdvlntg
    rsstpshprmpkphvfhshqlqppqlkvlyekermwtakktgyvptmddvkaaygdisde
    eekkqklellklsvnnsqplteeeekmkadwesegftnwnklefrkfitvsgkygrnsiq
    aiarelapgktleevrayakafwsnieriedyekylkiieneeekikrvkmqqealrrkl
    seyknpffdlklkhppssnnkrtyseeedrfillmlfkygldrddvyelvrdeirdcplf
    eldfyfrsrtpvelarrgntllqclekefnagivlddatkdrmkkedengkrireefadq
    tanekenvdgveskkakiedtsnvgteqlvaekipenetth
    

    Sequence, based on observed residues (ATOM records):
    >6iroL (L:)
    dlegttkrfehllslsglfkhfieskkfrqvldvleenqfrespayvngqlrpyqiqgvn
    wlvslhknkiagilademglgktlqtisflgylryiekipgpflviapkstlnnwlrein
    rwtpdvnafilqgdkeeraeliqkkllgcdfdvviasyeiiireksplkkinweyiiide
    ahrikneesmlsqvlreftsrnrllitgtplqnnlhelwallnfllpdifsdaqdfddwf
    ssesteedqdkivkqlhtvlqpfllrriksdvetsllpkkelnlyvgmssmqkkwykkil
    ekdesktrllnimmqlrkccnhpylfkgaepgppyttdehlvynaaklqvldkllkklke
    egsrvlifsqmsrlldiledycyfrnyeycridgstahedriqaiddynapdskkfvfll
    ttragglginltsadvvvlydsdwnpqadlqamdrahrigqkkqvkvfrlvtdnsveeki
    leratqklrldqlviq