PDB entry 6irl

View 6irl on RCSB PDB site
Description: crystal structure of 8-mer peptide from avian influenza h5n1 virus in complex with bf2*1501
Deposited on 2018-11-13, released 2020-03-18
The last revision was dated 2020-11-04, with a file datestamp of 2020-10-30.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: MHC class I molecule
    Species: Gallus gallus [TaxId:9031]
    Gene: BF2
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9GIP6 (3-272)
      • expression tag (1-2)
  • Chain 'B':
    Compound: Beta-2-microglobulin
    Species: Gallus gallus [TaxId:9031]
    Gene: B2M
    Database cross-references and differences (RAF-indexed):
    • Uniprot P21611 (3-100)
      • expression tag (2)
  • Chain 'C':
    Compound: arg-arg-glu-val-his-thr-tyr-tyr
    Species: Influenza A virus, synthetic [TaxId:196434]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6irlA (A:)
mefelhtlryistamtdpgpgqpwyvdvgyvdgelfthynstarravprtewiaantdqq
ywdsetqtsqrteqidrdglgtlqrrynqtggshtvqlmygcdiledgtirgysqdaydg
rdfiafdkdtmtftaavpeavptkrkweegdyaeglkqyleetcvewlrryveygkaelg
rrerpevrvwgkeadgiltlscrahgfyprpiavswlkdgavqgqdaqsggivpngdgty
htwvtidaqpgdgdkyqcrvehaslpqpglysw

    Sequence, based on observed residues (ATOM records):
    >6irlA (A:)
efelhtlryistamtdpgpgqpwyvdvgyvdgelfthynstarravprtewiaantdqqy
wdsetqtsqrteqidrdglgtlqrrynqtggshtvqlmygcdiledgtirgysqdaydgr
dfiafdkdtmtftaavpeavptkrkweegdyaeglkqyleetcvewlrryveygkaelgr
rerpevrvwgkeadgiltlscrahgfyprpiavswlkdgavqgqdaqsggivpngdgtyh
twvtidaqpgdgdkyqcrvehaslpqpglysw

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6irlB (B:)
mefdltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnd
dwtfqrlvhadftpssgstyackvehetlkepqvykwdpef

    Sequence, based on observed residues (ATOM records):
    >6irlB (B:)
fdltpkvqvysrfpasagtknvlncfaagfhppkisitlmkdgvpmegaqysdmsfnddw
tfqrlvhadftpssgstyackvehetlkepqvykwdpef

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6irlC (C:)
rrevhtyy