PDB entry 6ir5

View 6ir5 on RCSB PDB site
Description: p domain of gii.3-tv24
Deposited on 2018-11-10, released 2019-11-13
The last revision was dated 2019-12-11, with a file datestamp of 2019-12-06.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VP1 capsid protein
    Species: Minireovirus [TaxId:194422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: VP1 capsid protein
    Species: Minireovirus [TaxId:194422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: VP1 capsid protein
    Species: Minireovirus [TaxId:194422]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: VP1 capsid protein
    Species: Minireovirus [TaxId:194422]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ir5A (A:)
gplgssktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgtt
qllpsqicafrgtltrstsrasdqadtptprlfnyywhiqldnlngtpydpaedipaplg
tpdfrgkvfgvasqrnpdsttraheakvdttsgrftpklgsleittesddfdpnqptkft
pvgvgvdneaefqqwslpnysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngv
ldclvpqewvqhfyqesapaqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspit
vppngyfrfeswvnpfytlapmgtgng

    Sequence, based on observed residues (ATOM records):
    >6ir5A (A:)
tkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgttqllpsqi
cafrgtltrslfnyywhiqldnlngtpydpaedipaplgtpdfrgkvfgvasqrnpdstt
raheakvdttsgrftpklgsleittesddfdpnqptkftpvgvgvdneaefqqwslpnys
gqfthnmnlapavapnfpgeqllffrsqlpssggrsngvldclvpqewvqhfyqesapaq
tqvalvryvnpdtgrvlfeaklhklgfmtiakngdspitvppngyfrfeswvnpfytlap
m

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ir5B (B:)
gplgssktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgtt
qllpsqicafrgtltrstsrasdqadtptprlfnyywhiqldnlngtpydpaedipaplg
tpdfrgkvfgvasqrnpdsttraheakvdttsgrftpklgsleittesddfdpnqptkft
pvgvgvdneaefqqwslpnysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngv
ldclvpqewvqhfyqesapaqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspit
vppngyfrfeswvnpfytlapmgtgng

    Sequence, based on observed residues (ATOM records):
    >6ir5B (B:)
tkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgttqllpsqi
cafrgtltrstlfnyywhiqldnlngtpydpaedipaplgtpdfrgkvfgvasqrnpdst
traheakvdttsgrftpklgsleittesddfdpnqptkftpvgvgvdneaefqqwslpny
sgqfthnmnlapavapnfpgeqllffrsqlpssggrsngvldclvpqewvqhfyqesapa
qtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspitvppngyfrfeswvnpfytla
pm

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ir5C (C:)
gplgssktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgtt
qllpsqicafrgtltrstsrasdqadtptprlfnyywhiqldnlngtpydpaedipaplg
tpdfrgkvfgvasqrnpdsttraheakvdttsgrftpklgsleittesddfdpnqptkft
pvgvgvdneaefqqwslpnysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngv
ldclvpqewvqhfyqesapaqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspit
vppngyfrfeswvnpfytlapmgtgng

    Sequence, based on observed residues (ATOM records):
    >6ir5C (C:)
ktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgttqllpsq
icafrgtltrstslfnyywhiqldnlngtpydpaedipaplgtpdfrgkvfgvasqrnpd
sttraheakvdttsgrftpklgsleittesddfdpnqptkftpvgvgvdneaefqqwslp
nysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngvldclvpqewvqhfyqesa
paqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspitvppngyfrfeswvnpfyt
lapm

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ir5D (D:)
gplgssktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgtt
qllpsqicafrgtltrstsrasdqadtptprlfnyywhiqldnlngtpydpaedipaplg
tpdfrgkvfgvasqrnpdsttraheakvdttsgrftpklgsleittesddfdpnqptkft
pvgvgvdneaefqqwslpnysgqfthnmnlapavapnfpgeqllffrsqlpssggrsngv
ldclvpqewvqhfyqesapaqtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspit
vppngyfrfeswvnpfytlapmgtgng

    Sequence, based on observed residues (ATOM records):
    >6ir5D (D:)
ktkpftlpiltisemsnsrfpvpidslhtsptenivvqcqngrvtldgelmgttqllpsq
icafrgtltrslfnyywhiqldnlngtpydpaedipaplgtpdfrgkvfgvasqrnpdst
traheakvdttsgrftpklgsleittesddfdpnqptkftpvgvgvdneaefqqwslpny
sgqfthnmnlapavapnfpgeqllffrsqlpssggrsngvldclvpqewvqhfyqesapa
qtqvalvryvnpdtgrvlfeaklhklgfmtiakngdspitvppngyfrfeswvnpfytla
pm