PDB entry 6iqw

View 6iqw on RCSB PDB site
Description: cryo-em structure of csm effector complex
Deposited on 2018-11-09, released 2019-01-16
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 3.35 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: csm1
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0893
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Csm2
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0894
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Csm3
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0895
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Csm3
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0895
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Csm4
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0896
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Csm5
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
    Gene: TON_0897
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: RNA (5'-r(*gp*up*gp*gp*ap*ap*ap*gp*up*gp*gp*cp*cp*cp*gp*ap*ap*ap*cp*cp*cp*up*up*c)-3')
    Species: Thermococcus onnurineus (strain NA1) [TaxId:523850]
  • Heterogens: ATP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iqwA (A:)
    meideltalggllhdigkpvqraglysgdhstqgarflrdlaentgraeyellslfsefh
    hkghmkndelmirrikelsperfgltmedvlnalwivyeadnlasgereegqpqasrply
    svfnpgkaypwaeldfekelpvpgdvfsirsqdyrelvkrlweelskaklrsdrllpvle
    kyltfvssvtsegniislydhmrmtsaialamlragctaedvrsgrcrkekrflliegdf
    sgiqdfiyrvsgkgtlkylrarsayleligwdvvleilsrlgltranvvfnagghfmiia
    qntpdavkeleeirakavewlyrefesdlylaiewepvsgrefgreggknlfaearkrlk
    hkltvrklkrfgeikglfehghterlaecpvcgrelpegklepsasdpetkvcptcnrlv
    slggnlpkllgfgrtakndagvlvegpfsgfvpylqggrpvgeqilvkntlnpgeipesa
    qfvpyfvadyfkkdpkggvatfeelsmastgtrrlgvmkgdvdrlgeffssmdspsklat
    asrfmdyffkgyigaiiegkfgyiigdvpslrdwpeepdivvvyaggddffivgawdqif
    elafrvrrafnaytggkltlsvglgyfdertpiyrmadvvserldtakdegrnrvfvvgr
    srpldgkhklsyewnhyeelwrtyapriyagngrlkgkleskkgllwklleirelyvrdp
    ndvrwayltayllgrhglsdlfpelvgidtkaverkepqpvywvdgvlkivlmavrr
    

    Sequence, based on observed residues (ATOM records):
    >6iqwA (A:)
    meideltalggllhdigkpvqraglysgdhstqgarflrdlaentgraeyellslfsefh
    hkghmkndelmirrikelsperfgltmedvlnalwivyeadnlasgpqasrplysvfnpg
    kaypwaeldfekelpvpgdvfsirsqdyrelvkrlweelskaklrsdrllpvlekyltfv
    ssvtsegniislydhmrmtsaialamlragctaedvrsgrcrkekrflliegdfsgiqdf
    iyrvsgkgtlkylrarsayleligwdvvleilsrlgltranvvfnagghfmiiaqntpda
    vkeleeirakavewlyrefesdlylaiewepvsgrefgreggknlfaearkrlkhkltvr
    klkrfgeikglfehghterlaecpvcgrelpegklepsasdpetkvcptcnrlvslggnl
    pkllgfgrtakndagvlvegpfsgfvpylqggrpvgeqilvkntlnpgeipesaqfvpyf
    vadyfkkdpkggvatfeelsmastgtrrlgvmkgdvdrlgeffssmdspsklatasrfmd
    yffkgyigaiiegkfgyiigdvpslrdwpeepdivvvyaggddffivgawdqifelafrv
    rrafnaytggkltlsvglgyfdertpiyrmadvvserldtakdegrnrvfvvgrsrpldg
    khklsyewnhyeelwrtyapriyagngrlkgkleskkgllwklleirelyvrdpndvrwa
    yltayllgrhglsdlfpelvgidtkaverkepqpvywvdgvlkivlmavrr
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iqwB (B:)
    mhhhhhhvifvayhqkhggygrggygrqdrpqvdasrlfgespdvvgikkmlegkgkqwe
    aiqpyfdnvvreaknflewspnkrlanavtvaayltsqglktnqvrkildmarttelkvk
    rgegdikddlvkmryllaytvgkatgqskysldafhrildpmlevlmgspkkenfekfyd
    flqavvayhkffgggd
    

    Sequence, based on observed residues (ATOM records):
    >6iqwB (B:)
    qweaiqpyfdnvvreaknflewspnkrlanavtvaayltsqglktnqvrkildmarttel
    kvkrgegdikddlvkmryllaytvgkatgqskysldafhrildpmlevlmgspkkenfek
    fydflqavvayhkf
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iqwC (C:)
    mdrrfygkivikgkikavtglhigsqrdiseiggidnpvikdphtglpyipgsslkgrlr
    slfeilvnsrlgewrekypslanyspgscrpdnqencgkffnrkinrgwihvcpdyetal
    acpvcrlfgasgkesnfpsriivrdafltkeweekwrageaiteakievgidrvtsqanp
    rtnervvagaefefeiiynventthwrddiknlltamalledsylggsgsrgygkvkfif
    dsfefrpldyyrtgkdedivsidareksvsdilsgfdslfsevegkleag
    

    Sequence, based on observed residues (ATOM records):
    >6iqwC (C:)
    rfygkivikgkikavtglhigsnpvikdphtglpyipgsslkgrlrslfeilvnsrlgew
    rekypslanyspgscrpdnqencgkffnrkinrgwihvcpdyetalacpvcrlfgasgke
    snfpsriivrdafltkeweekwrageaiteakievgidrvtsqanprtnervvagaefef
    eiiynventthwrddiknlltamalledsylggsgsrgygkvkfifdsfefrpldyyrtg
    kdedivsidareksvsdilsgfdslfsevegkle
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iqwD (D:)
    mdrrfygkivikgkikavtglhigsqrdiseiggidnpvikdphtglpyipgsslkgrlr
    slfeilvnsrlgewrekypslanyspgscrpdnqencgkffnrkinrgwihvcpdyetal
    acpvcrlfgasgkesnfpsriivrdafltkeweekwrageaiteakievgidrvtsqanp
    rtnervvagaefefeiiynventthwrddiknlltamalledsylggsgsrgygkvkfif
    dsfefrpldyyrtgkdedivsidareksvsdilsgfdslfsevegkleag
    

    Sequence, based on observed residues (ATOM records):
    >6iqwD (D:)
    mdrrfygkivikgkikavtglhigsqpvikdphtglpyipgsslkgrlrslfeilvnsrl
    gewrekypslanyspgscrpdnqencgkffnrkinrgwihvcpdyetalacpvcrlfgas
    gkesnfpsriivrdafltkeweekwrageaiteakievgidrvtsqanprtnervvagae
    fefeiiynventthwrddiknlltamalledsylggsgsrgygkvkfifdsfefrpldyy
    rtgkdedivsidareksvsdilsgfdslfse
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6iqwE (E:)
    mpkfiavklipkgpfrdipradtlfgaignaisaihgqsaveelvdafvggarissafpy
    sgdtyylpkplsvepalegiltgldeeeryttakrlrkakyldlknfelalrlrpftipe
    eipyarvdvprvvldrvtqdssiyfweeirfreksgvyflysgprevfdgyiapamrflg
    dtgiggkstwgaglfevefhemkidapgseysvtlsnalptktpvlwrllrkggwsfgrr
    kprmtfiaegsivkndpggmerlelglshevyvygltfplgvelpegle
    

    Sequence, based on observed residues (ATOM records):
    >6iqwE (E:)
    pkfiavklipkgpfrdipradtlfgaignaisaihgqsaveelvdafvggarissafpys
    gdtyylpkplsvepalegiltgldeeeryttakrlrkakyldlknfelalrlrpftipee
    ipyarvdvprvvldrvtqdssiyfweeirfreksgvyflysgprevfdgyiapamrflgw
    gaglfevefhemkidapgseysvtlsnalptktpvlwrllrkggwsfgrrkprmtfiaeg
    sivkndpggmerlelglshevyvygltfplgvelpeg
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6iqwF (F:)
    mtertlkvlsplhigtgneltpvdiypreniihvldterlvndlmnlgvelneilallkn
    ppgdayiwkgyieefhldpsdysiytlkihgkigrksmqikefiklngrpyipgsslkga
    irtavlykalkecgdaravmrvvskvngdvardigrsedvldyymsflsraridrkradd
    lleaivfgmepdrrskiryepkrdpmkalivrdskpvgrkhlavyhvevignpqpipiwv
    eaiepgaatdveihvdtealrlnadyfngllweclkergepgevfedflweavdefytav
    mkyetievqkfgrytsqvrsfyasledhsghvlrlgwgsgwlamtiglllvekgykwenv
    rkklglgkkpggsgfsrefpktrrladgmpmgwvvle
    

    Sequence, based on observed residues (ATOM records):
    >6iqwF (F:)
    tertlkvlsplhigtgneltpvdiypreniihvldterlvndlmnlgvelneilallknp
    pgdayiwkgyieefhldpsdysiytlkihgsmqikefiklngrpyipgsslkgairtavl
    ykalkecgdaravmrvvskvngdvardigrsedvldyymsflsraridrkraddlleaiv
    fgmepdrrskiryepkrdpmkalivrdskpvgrkhlavyhvevignpqpipiwveaiepg
    aatdveihvdtealrlnadyfngllweclkergepgevfedflweavdefytavmkyeti
    evqkfgrytsqvrsfyasledhsghvlrlgktrrladgmpmgwvvl
    

  • Chain 'I':
    No sequence available.