PDB entry 6iqt

View 6iqt on RCSB PDB site
Description: crystal structure of cagv, a virb8 homolog of t4ss from helicobacter pylori strain 26695
Deposited on 2018-11-08, released 2019-11-13
The last revision was dated 2020-04-29, with a file datestamp of 2020-04-24.
Experiment type: XRAY
Resolution: 1.92 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cag pathogenicity island protein (Cag10)
    Species: Helicobacter pylori 26695 [TaxId:85962]
    Gene: HP_0530
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Cag pathogenicity island protein (Cag10)
    Species: Helicobacter pylori 26695 [TaxId:85962]
    Gene: HP_0530
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Cag pathogenicity island protein (Cag10)
    Species: Helicobacter pylori 26695 [TaxId:85962]
    Gene: HP_0530
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Cag pathogenicity island protein (Cag10)
    Species: Helicobacter pylori 26695 [TaxId:85962]
    Gene: HP_0530
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iqtA (A:)
gtssmadigsgefkivkrsdarqivnseavvdsatskfvsllfgysknslrdrkdqlmqy
cdvsfqtqamrmfnenirqfvdkvraeaiissniqrekvknspltrltffitikitpdtm
enyeyitkkqvtiyydfargnssqenliinpfgfkvfdiqitdlqn

    Sequence, based on observed residues (ATOM records):
    >6iqtA (A:)
qivnseavvdsatskfvsllfgysknslrdrkdqlmqycdvsfqtqamrmfnenirqfvd
kvraeaiissniqrekvknspltrltffitikitpdtmenyeyitkkqvtiyydfaliin
pfgfkvfdiqitdlq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iqtB (B:)
gtssmadigsgefkivkrsdarqivnseavvdsatskfvsllfgysknslrdrkdqlmqy
cdvsfqtqamrmfnenirqfvdkvraeaiissniqrekvknspltrltffitikitpdtm
enyeyitkkqvtiyydfargnssqenliinpfgfkvfdiqitdlqn

    Sequence, based on observed residues (ATOM records):
    >6iqtB (B:)
avvdsatskfvsllfgysknslrdrkdqlmqycdvsfqtqamrmfnenirqfvdkvraea
iissniqrekvknspltrltffitikitpdtmenyeyitkkqvtiyydfaliinpfgfkv
fdiqitdlq

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iqtC (C:)
gtssmadigsgefkivkrsdarqivnseavvdsatskfvsllfgysknslrdrkdqlmqy
cdvsfqtqamrmfnenirqfvdkvraeaiissniqrekvknspltrltffitikitpdtm
enyeyitkkqvtiyydfargnssqenliinpfgfkvfdiqitdlqn

    Sequence, based on observed residues (ATOM records):
    >6iqtC (C:)
eavvdsatskfvsllfgysknslrdrkdqlmqycdvsfqtqamrmfnenirqfvdkvrae
aiissniqrekvknspltrltffitikitpdtmenyeyitkkqvtiyydfaliinpfgfk
vfdiqitdlq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iqtD (D:)
gtssmadigsgefkivkrsdarqivnseavvdsatskfvsllfgysknslrdrkdqlmqy
cdvsfqtqamrmfnenirqfvdkvraeaiissniqrekvknspltrltffitikitpdtm
enyeyitkkqvtiyydfargnssqenliinpfgfkvfdiqitdlqn

    Sequence, based on observed residues (ATOM records):
    >6iqtD (D:)
vnseavvdsatskfvsllfgysknslrdrkdqlmqycdvsfqtqamrmfnenirqfvdkv
raeaiissniqrekvknspltrltffitikitpdtmenyeyitkkqvtiyydfaliinpf
gfkvfdiqitdlq