PDB entry 6iqm

View 6iqm on RCSB PDB site
Description: crystal structure of cell surface glyceraldehyde-3-phosphate dehydrogenase complexed with nad+ from lactobacillus plantarum
Deposited on 2018-11-08, released 2018-11-21
The last revision was dated 2019-05-15, with a file datestamp of 2019-05-10.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.35 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase, type I
    Species: Lactobacillus plantarum subsp. plantarum JCM 1149 [TaxId:525338]
    Gene: gap, HMPREF0531_11006
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase, type I
    Species: Lactobacillus plantarum subsp. plantarum JCM 1149 [TaxId:525338]
    Gene: gap, HMPREF0531_11006
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase, type I
    Species: Lactobacillus plantarum subsp. plantarum JCM 1149 [TaxId:525338]
    Gene: gap, HMPREF0531_11006
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Glyceraldehyde-3-phosphate dehydrogenase, type I
    Species: Lactobacillus plantarum subsp. plantarum JCM 1149 [TaxId:525338]
    Gene: gap, HMPREF0531_11006
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAD, EDO, TRS, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iqmA (A:)
msvkigingfgrigrlafrrilelgekssdievvaindltspallahllkydsthgtlna
dvsatddsivvngknyrvyaepqaqnipwvkndgvdfvlectgfytskaksqahldagak
rvlisapagsdlktivynvnddiltaddrivsagscttnclaplaffenkefgikvgtmt
tihaytstqmlldgpvrggnfraaraagvntiphstgaakalglvipelngklqghaqrv
gvvdgsltelvaildkkvtadevnaaikkhtegnesfgynddeivssdvigttfgsifdp
tqtevtsdgdnqlvktvawydneygftcqmvrtllkfatl

    Sequence, based on observed residues (ATOM records):
    >6iqmA (A:)
msvkigingfgrigrlafrrilelgeksdievvaindltspallahllkydsthgtlnad
vsatddsivvngknyrvyaepqaqnipwvkndgvdfvlectgfytskaksqahldagakr
vlisapagsdlktivynvnddiltaddrivsagscttnclaplaffenkefgikvgtmtt
ihaytstqmlldgpvrggnfraaraagvntiphstgaakalglvipelngklqghaqrvg
vvdgsltelvaildkkvtadevnaaikkhtegnesfgynddeivssdvigttfgsifdpt
qtevtsdgdnqlvktvawydneygftcqmvrtllkfatl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iqmB (B:)
msvkigingfgrigrlafrrilelgekssdievvaindltspallahllkydsthgtlna
dvsatddsivvngknyrvyaepqaqnipwvkndgvdfvlectgfytskaksqahldagak
rvlisapagsdlktivynvnddiltaddrivsagscttnclaplaffenkefgikvgtmt
tihaytstqmlldgpvrggnfraaraagvntiphstgaakalglvipelngklqghaqrv
gvvdgsltelvaildkkvtadevnaaikkhtegnesfgynddeivssdvigttfgsifdp
tqtevtsdgdnqlvktvawydneygftcqmvrtllkfatl

    Sequence, based on observed residues (ATOM records):
    >6iqmB (B:)
svkigingfgrigrlafrrilelgsdievvaindltspallahllkydsthgtlnadvsa
tddsivvngknyrvyaepqavlectgfytskaksqahldagakrvlisapagsdlktivy
nvnddiltaddrivsagscttnclaplaffenkefgikvgtmttihaytstqmlldgpvr
ggnfraaraagvntiphstgaakalglvipelngklqghaqrvgvvdgsltelvaildkk
vtadevnaaikkhtegnesfgynddeivssdvigttfgsifdptqtevtsdgdnqlvktv
awydneygftcqmvrtllkfatl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iqmC (C:)
msvkigingfgrigrlafrrilelgekssdievvaindltspallahllkydsthgtlna
dvsatddsivvngknyrvyaepqaqnipwvkndgvdfvlectgfytskaksqahldagak
rvlisapagsdlktivynvnddiltaddrivsagscttnclaplaffenkefgikvgtmt
tihaytstqmlldgpvrggnfraaraagvntiphstgaakalglvipelngklqghaqrv
gvvdgsltelvaildkkvtadevnaaikkhtegnesfgynddeivssdvigttfgsifdp
tqtevtsdgdnqlvktvawydneygftcqmvrtllkfatl

    Sequence, based on observed residues (ATOM records):
    >6iqmC (C:)
svkigingfgrigrlafrrilelgeevvaindltspallahllkydsthgtlnadvsatd
dsivvngknyrvyaepqaqnipwvkndgvdfvlectgfytskaksqahldagakrvlisa
pagsdlktivynvnddiltaddrivsagscttnclaplaffenkefgikvgtmttihayt
stqmlldgpvrggnfraaraagvntiphstgaakalglvipelngklqghaqrvgvvdgs
ltelvaildkkvtadevnaaikkhtegnesfgynddeivssdvigttfgsifdptqtevt
sdgdnqlvktvawydneygftcqmvrtllkfatl

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6iqmD (D:)
msvkigingfgrigrlafrrilelgekssdievvaindltspallahllkydsthgtlna
dvsatddsivvngknyrvyaepqaqnipwvkndgvdfvlectgfytskaksqahldagak
rvlisapagsdlktivynvnddiltaddrivsagscttnclaplaffenkefgikvgtmt
tihaytstqmlldgpvrggnfraaraagvntiphstgaakalglvipelngklqghaqrv
gvvdgsltelvaildkkvtadevnaaikkhtegnesfgynddeivssdvigttfgsifdp
tqtevtsdgdnqlvktvawydneygftcqmvrtllkfatl