PDB entry 6iq6

View 6iq6 on RCSB PDB site
Description: crystal structure of gapdh
Deposited on 2018-11-06, released 2019-08-28
The last revision was dated 2019-09-11, with a file datestamp of 2019-09-06.
Experiment type: XRAY
Resolution: 2.29 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Homo sapiens [TaxId:9606]
    Gene: GAPDH, GAPD, CDABP0047, OK/SW-cl.12
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Homo sapiens [TaxId:9606]
    Gene: GAPDH, GAPD, CDABP0047, OK/SW-cl.12
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Homo sapiens [TaxId:9606]
    Gene: GAPDH, GAPD, CDABP0047, OK/SW-cl.12
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Homo sapiens [TaxId:9606]
    Gene: GAPDH, GAPD, CDABP0047, OK/SW-cl.12
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Homo sapiens [TaxId:9606]
    Gene: GAPDH, GAPD, CDABP0047, OK/SW-cl.12
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Homo sapiens [TaxId:9606]
    Gene: GAPDH, GAPD, CDABP0047, OK/SW-cl.12
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Homo sapiens [TaxId:9606]
    Gene: GAPDH, GAPD, CDABP0047, OK/SW-cl.12
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: glyceraldehyde-3-phosphate dehydrogenase
    Species: Homo sapiens [TaxId:9606]
    Gene: GAPDH, GAPD, CDABP0047, OK/SW-cl.12
    Database cross-references and differences (RAF-indexed):
  • Heterogens: AW9, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iq6A (A:)
mgkvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtv
kaengklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrvi
isapsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvha
itatqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanv
svvdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagag
ialndhfvkliswydnefgysnrvvdlmahmaske

    Sequence, based on observed residues (ATOM records):
    >6iq6A (A:)
kvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtvka
engklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrviis
apsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvhait
atqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanvsv
vdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagagia
lndhfvkliswydnefgysnrvvdlmahmaske

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iq6B (B:)
mgkvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtv
kaengklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrvi
isapsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvha
itatqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanv
svvdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagag
ialndhfvkliswydnefgysnrvvdlmahmaske

    Sequence, based on observed residues (ATOM records):
    >6iq6B (B:)
kvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtvka
engklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrviis
apsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvhait
atqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanvsv
vdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagagia
lndhfvkliswydnefgysnrvvdlmahmaske

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iq6C (C:)
mgkvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtv
kaengklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrvi
isapsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvha
itatqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanv
svvdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagag
ialndhfvkliswydnefgysnrvvdlmahmaske

    Sequence, based on observed residues (ATOM records):
    >6iq6C (C:)
kvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtvka
engklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrviis
apsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvhait
atqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanvsv
vdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagagia
lndhfvkliswydnefgysnrvvdlmahmaske

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iq6D (D:)
mgkvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtv
kaengklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrvi
isapsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvha
itatqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanv
svvdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagag
ialndhfvkliswydnefgysnrvvdlmahmaske

    Sequence, based on observed residues (ATOM records):
    >6iq6D (D:)
kvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtvka
engklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrviis
apsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvhait
atqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanvsv
vdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagagia
lndhfvkliswydnefgysnrvvdlmahmaske

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6iq6E (E:)
mgkvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtv
kaengklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrvi
isapsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvha
itatqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanv
svvdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagag
ialndhfvkliswydnefgysnrvvdlmahmaske

    Sequence, based on observed residues (ATOM records):
    >6iq6E (E:)
kvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtvka
engklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrviis
apsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvhait
atqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanvsv
vdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagagia
lndhfvkliswydnefgysnrvvdlmahmaske

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6iq6F (F:)
mgkvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtv
kaengklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrvi
isapsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvha
itatqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanv
svvdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagag
ialndhfvkliswydnefgysnrvvdlmahmaske

    Sequence, based on observed residues (ATOM records):
    >6iq6F (F:)
kvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtvka
engklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrviis
apsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvhait
atqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanvsv
vdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagagia
lndhfvkliswydnefgysnrvvdlmahmaske

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6iq6G (G:)
mgkvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtv
kaengklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrvi
isapsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvha
itatqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanv
svvdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagag
ialndhfvkliswydnefgysnrvvdlmahmaske

    Sequence, based on observed residues (ATOM records):
    >6iq6G (G:)
kvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtvka
engklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrviis
apsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvhait
atqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanvsv
vdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagagia
lndhfvkliswydnefgysnrvvdlmahmaske

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6iq6H (H:)
mgkvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtv
kaengklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrvi
isapsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvha
itatqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanv
svvdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagag
ialndhfvkliswydnefgysnrvvdlmahmaske

    Sequence, based on observed residues (ATOM records):
    >6iq6H (H:)
kvkvgvngfgrigrlvtraafnsgkvdivaindpfidlnymvymfqydsthgkfhgtvka
engklvingnpitifqerdpskikwgdagaeyvvestgvfttmekagahlqggakrviis
apsadapmfvmgvnhekydnslkiisnascttnclaplakvihdnfgiveglmttvhait
atqktvdgpsgklwrdgrgalqniipastgaakavgkvipelngkltgmafrvptanvsv
vdltcrlekpakyddikkvvkqasegplkgilgytehqvvssdfnsdthsstfdagagia
lndhfvkliswydnefgysnrvvdlmahmaske