PDB entry 6ipd

View 6ipd on RCSB PDB site
Description: post-catalytic complex of human dna polymerase mu with templating adenine and mn-8oxodgmp
Deposited on 2018-11-03, released 2019-05-29
The last revision was dated 2019-06-12, with a file datestamp of 2019-06-07.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-directed DNA/RNA polymerase mu
    Species: Homo sapiens [TaxId:9606]
    Gene: POLM, polmu
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9NP87 (Start-270)
      • linker (271)
    • Uniprot Q9NP87 (272-355)
  • Chain 'D':
    Compound: DNA (5'-d(p*gp*cp*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'P':
    Compound: DNA (5'-d(*cp*gp*tp*ap*(8og))-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'T':
    Compound: DNA (5'-d(*cp*gp*gp*cp*ap*tp*ap*cp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: 8OG, MN, NA, OXD, EPE, EDO, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ipdA (A:)
gsaaaplspawmpayacqrptplthhntglsealeilaeaagfegsegrlltfcraasvl
kalpspvttlsqlqglphfgehssrvvqellehgvceevervrrseryqtmklftqifgv
gvktadrwyreglrtlddlreqpqkltqqqkaglqhhqdlstpvlrsdvdalqqvveeav
gqalpgatvtltggfrrgklqghdvdflithpkegqeagllprvmcrlqdqglilyhqhq
hsccesptrlaqqshmdafersfcifrlpqpgswkavrvdlvvapvsqfpfallgwtgsk
lfqrelrrfsrkekglwlnshglfdpeqktffqaaseedifrhlgleylppeqrna

    Sequence, based on observed residues (ATOM records):
    >6ipdA (A:)
mpayacqrptplthhntglsealeilaeaagfegsegrlltfcraasvlkalpspvttls
qlqglphfgehssrvvqellehgvceevervrrseryqtmklftqifgvgvktadrwyre
glrtlddlreqpqkltqqqkaglqhhqdlstpvlrsdvdalqqvveeavgqalpgatvtl
tggfrrgklqghdvdflithpkegqeagllprvmcrlqdqglilyhqhfersfcifrlpq
pgswkavrvdlvvapvsqfpfallgwtgsklfqrelrrfsrkekglwlnshglfdpeqkt
ffqaaseedifrhlgleylppeqrna

  • Chain 'D':
    No sequence available.

  • Chain 'P':
    No sequence available.

  • Chain 'T':
    No sequence available.