PDB entry 6ip4

View 6ip4 on RCSB PDB site
Description: crystal structure of arabidopsis thaliana jmj13 catalytic domain in complex with nog and an h3k27me3 peptide
Deposited on 2018-11-02, released 2019-04-10
The last revision was dated 2019-04-10, with a file datestamp of 2019-04-05.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Arabidopsis JMJ13
    Species: Arabidopsis thaliana [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Histone H3.2
    Species: ARABIDOPSIS THALIANA, synthetic [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NI, ZN, OGA, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ip4A (A:)
setddlkwterlpecpvyrptkeefedpltylqkifpeaskygickivspltatvpagav
lmkeksnfkfttrvqplrlaewdsddkvtffmsgrtytfrdyekmankvfarrycsggsl
pdsflekefwkeiacgktetveyacdvdgsafssapgdplgsskwnlnkvsrlpkstlrl
letsipgvtepmlyigmlfsmfawhvedhylysinyqhcgasktwygipgsaalkfekvv
kecvynddilstngedgafdvllgkttifppktlldhnvpvykavqkpgefvvtfprayh
agfshgfncgeavnfamgdwfpfgaiascryahlnrvpllpheelickeamllnssskse
nldltptelsgqrsiktafvhlirflhlarwslmksglctglvsntygtivcslckrdcy
lafincecyshpvclrhdvkkldlpcgtthtlylrdniedmeaaamkfekedgvsdlitt
dedlykypss

    Sequence, based on observed residues (ATOM records):
    >6ip4A (A:)
dlkwterlpecpvyrptkeefedpltylqkifpeaskygickivspltatvpagavlmke
ksnfkfttrvqplrlaewdsddkvtffmsgrtytfrdyekmankvfarrycsggslpdsf
lekefwkeiacgktetveyacdvdgsafssapgdplgsskwnlnkvsrlpkstlrllets
ipgvtepmlyigmlfsmfawhvedhylysinyqhcgasktwygipgsaalkfekvvkecv
ynddilstngedgafdvllgkttifppktlldhnvpvykavqkpgefvvtfprayhagfs
hgfncgeavnfamgdwfpfgaiascryahlnrvpllpheelickeamllnsssksenldl
tptelsgqrsiktafvhlirflhlarwslmksglctglvsntygtivcslckrdcylafi
ncecyshpvclrhdvkkldlpcgtthtlylrdniedmeaaamkfekedgvs

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ip4B (B:)
aarksapatggv

    Sequence, based on observed residues (ATOM records):
    >6ip4B (B:)
aarksapa