PDB entry 6ip1

View 6ip1 on RCSB PDB site
Description: alpha-snap-snare subcomplex in the whole 20s complex
Deposited on 2018-11-01, released 2019-04-24
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vesicle-associated membrane protein 2
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Vamp2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: syntaxin-1a
    Species: Rattus norvegicus [TaxId:10116]
    Gene: STX1A
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: synaptosomal-associated protein 25
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Snap25
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: synaptosomal-associated protein 25
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Snap25
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Alpha-soluble NSF attachment protein
    Species: Bos taurus [TaxId:9913]
    Gene: NAPA
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Alpha-soluble NSF attachment protein
    Species: Bos taurus [TaxId:9913]
    Gene: NAPA
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Alpha-soluble NSF attachment protein
    Species: Bos taurus [TaxId:9913]
    Gene: NAPA
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Alpha-soluble NSF attachment protein
    Species: Bos taurus [TaxId:9913]
    Gene: NAPA
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ip1A (A:)
gshmsataatvppaapageggppapppnltsnrrlqqtqaqvdevvdimrvnvdkvlerd
qklselddradalqagasqfetsaaklkrkywwknlk

    Sequence, based on observed residues (ATOM records):
    >6ip1A (A:)
tsnrrlqqtqaqvdevvdimrvnvdkvlerdqklselddradalqagasqfetsaaklkr
kyw

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ip1B (B:)
gskdrtqelrtakdsdddddvtvtvdrdrfmdeffeqveeirgfidkiaenveevkrkhs
ailaspnpdektkeeleelmsdikktankvrsklksieqsieqeeglnrssadlrirktq
hstlsrkfvevmseynatqsdyrerckgriqrqleitgrtttseeledmlesgnpaifas
giimdssiskqalseietrhseiiklensirelhdmfmdmamlvesqgemidrieynveh
avdyveravsdtkk

    Sequence, based on observed residues (ATOM records):
    >6ip1B (B:)
lseietrhseiiklensirelhdmfmdmamlvesqgemidrieynvehavdyveravsdt
kk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ip1C (C:)
gsmaedadmrneleemqrradqladeslestrrmlqlveeskdagirtlvmldeqgeqle
rieegmdqinkdmkeaeknltdlgkfcglcvcpcnklkssda

    Sequence, based on observed residues (ATOM records):
    >6ip1C (C:)
radqladeslestrrmlqlveeskdagirtlvmldeqgeqlerieegmdqinkdmkeaek
nltdl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ip1D (D:)
gsqmaisggfirrvtndarenemdenleqvsgiignlrhmaldmgneidtqnrqidrime
kadsnktrideanqratkmlgsg

    Sequence, based on observed residues (ATOM records):
    >6ip1D (D:)
arenemdenleqvsgiignlrhmaldmgneidtqnrqidrimekadsnktrideanqrat
km

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ip1E (E:)
gsmrgshhhhhhgsmdnsgkeaeamallaeaerkvknsqsffsglfggsskieeaceiya
raanmfkmaknwsaagsafcqaaqlhlqlqskhdaatcfvdagnafkkadpqeainclmr
aieiytdmgrftiaakhhisiaeiyetelvdiekaiahyeqsadyykgeesnssankcll
kvagyaaqleqyqkaidiyeqvgtnamdspllkysakdyffkaalchfcidmlnaklavq
kyeelfpafsdsrecklmkklleaheeqnvdsyteavkeydsisrldqwlttmllrikkt
iqgdeedlr

    Sequence, based on observed residues (ATOM records):
    >6ip1E (E:)
sgkeaeamallaeaerkvknsqsffsglfggsskieeaceiyaraanmfkmaknwsaags
afcqaaqlhlqlqskhdaatcfvdagnafkkadpqeainclmraieiytdmgrftiaakh
hisiaeiyetelvdiekaiahyeqsadyykgeesnssankcllkvagyaaqleqyqkaid
iyeqvgtnamdspllkysakdyffkaalchfcidmlnaklavqkyeelfpafsdsreckl
mkklleaheeqnvdsyteavkeydsisrldqwlttmllrikktiqgdeedlr

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ip1F (F:)
gsmrgshhhhhhgsmdnsgkeaeamallaeaerkvknsqsffsglfggsskieeaceiya
raanmfkmaknwsaagsafcqaaqlhlqlqskhdaatcfvdagnafkkadpqeainclmr
aieiytdmgrftiaakhhisiaeiyetelvdiekaiahyeqsadyykgeesnssankcll
kvagyaaqleqyqkaidiyeqvgtnamdspllkysakdyffkaalchfcidmlnaklavq
kyeelfpafsdsrecklmkklleaheeqnvdsyteavkeydsisrldqwlttmllrikkt
iqgdeedlr

    Sequence, based on observed residues (ATOM records):
    >6ip1F (F:)
sgkeaeamallaeaerkvknsqsffsglfggsskieeaceiyaraanmfkmaknwsaags
afcqaaqlhlqlqskhdaatcfvdagnafkkadpqeainclmraieiytdmgrftiaakh
hisiaeiyetelvdiekaiahyeqsadyykgeesnssankcllkvagyaaqleqyqkaid
iyeqvgtnamdspllkysakdyffkaalchfcidmlnaklavqkyeelfpafsdsreckl
mkklleaheeqnvdsyteavkeydsisrldqwlttmllrikktiqgdeedlr

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ip1G (G:)
gsmrgshhhhhhgsmdnsgkeaeamallaeaerkvknsqsffsglfggsskieeaceiya
raanmfkmaknwsaagsafcqaaqlhlqlqskhdaatcfvdagnafkkadpqeainclmr
aieiytdmgrftiaakhhisiaeiyetelvdiekaiahyeqsadyykgeesnssankcll
kvagyaaqleqyqkaidiyeqvgtnamdspllkysakdyffkaalchfcidmlnaklavq
kyeelfpafsdsrecklmkklleaheeqnvdsyteavkeydsisrldqwlttmllrikkt
iqgdeedlr

    Sequence, based on observed residues (ATOM records):
    >6ip1G (G:)
sgkeaeamallaeaerkvknsqsffsglfggsskieeaceiyaraanmfkmaknwsaags
afcqaaqlhlqlqskhdaatcfvdagnafkkadpqeainclmraieiytdmgrftiaakh
hisiaeiyetelvdiekaiahyeqsadyykgeesnssankcllkvagyaaqleqyqkaid
iyeqvgtnamdspllkysakdyffkaalchfcidmlnaklavqkyeelfpafsdsreckl
mkklleaheeqnvdsyteavkeydsisrldqwlttmllrikktiqgdeedlr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ip1H (H:)
gsmrgshhhhhhgsmdnsgkeaeamallaeaerkvknsqsffsglfggsskieeaceiya
raanmfkmaknwsaagsafcqaaqlhlqlqskhdaatcfvdagnafkkadpqeainclmr
aieiytdmgrftiaakhhisiaeiyetelvdiekaiahyeqsadyykgeesnssankcll
kvagyaaqleqyqkaidiyeqvgtnamdspllkysakdyffkaalchfcidmlnaklavq
kyeelfpafsdsrecklmkklleaheeqnvdsyteavkeydsisrldqwlttmllrikkt
iqgdeedlr

    Sequence, based on observed residues (ATOM records):
    >6ip1H (H:)
sgkeaeamallaeaerkvknsqsffsglfggsskieeaceiyaraanmfkmaknwsaags
afcqaaqlhlqlqskhdaatcfvdagnafkkadpqeainclmraieiytdmgrftiaakh
hisiaeiyetelvdiekaiahyeqsadyykgeesnssankcllkvagyaaqleqyqkaid
iyeqvgtnamdspllkysakdyffkaalchfcidmlnaklavqkyeelfpafsdsreckl
mkklleaheeqnvdsyteavkeydsisrldqwlttmllrikktiqgdeedlr