PDB entry 6ip0

View 6ip0 on RCSB PDB site
Description: crystal structure of arabidopsis thaliana jmj13 catalytic domain in complex with akg
Deposited on 2018-11-01, released 2019-04-10
The last revision was dated 2019-04-10, with a file datestamp of 2019-04-05.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcription factor jumonji (Jmj) family protein
    Species: Arabidopsis thaliana [TaxId:3702]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: AKG, NI, ZN, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ip0A (A:)
    setddlkwterlpecpvyrptkeefedpltylqkifpeaskygickivspltatvpagav
    lmkeksnfkfttrvqplrlaewdsddkvtffmsgrtytfrdyekmankvfarrycsggsl
    pdsflekefwkeiacgktetveyacdvdgsafssapgdplgsskwnlnkvsrlpkstlrl
    letsipgvtepmlyigmlfsmfawhvedhylysinyqhcgasktwygipgsaalkfekvv
    kecvynddilstngedgafdvllgkttifppktlldhnvpvykavqkpgefvvtfprayh
    agfshgfncgeavnfamgdwfpfgaiascryahlnrvpllpheelickeamllnssskse
    nldltptelsgqrsiktafvhlirflhlarwslmksglctglvsntygtivcslckrdcy
    lafincecyshpvclrhdvkkldlpcgtthtlylrdniedmeaaamkfekedgvsdlitt
    dedlykypss
    

    Sequence, based on observed residues (ATOM records):
    >6ip0A (A:)
    dlkwterlpecpvyrptkeefedpltylqkifpeaskygickivspltatvpagavlmke
    ksnfkfttrvqplrlaewdsddkvtffmsgrtytfrdyekmankvfarrycsggslpdsf
    lekefwkeiacgktetveyacdvdgsafssapgdplgsskwnlnkvsrlpkstlrllets
    ipgvtepmlyigmlfsmfawhvedhylysinyqhcgasktwygipgsaalkfekvvkecv
    ynddilstngedgafdvllgkttifppktlldhnvpvykavqkpgefvvtfprayhagfs
    hgfncgeavnfamgdwfpfgaiascryahlnrvpllpheelickeamllnsssksenldl
    tptelsgqrsiktafvhlirflhlarwslmksglctglvsntygtivcslckrdcylafi
    ncecyshpvclrhdvkkldlpcgtthtlylrdniedmeaaamkfekedgvsd