PDB entry 6ioy

View 6ioy on RCSB PDB site
Description: Crystal structure of Porphyromonas gingivalis acetate kinase
Class: transferase
Keywords: Porphyromonas gingivalis, acetate kinase, ATP, essential gene, TRANSFERASE
Deposited on 2018-10-31, released 2019-04-24
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-08, with a file datestamp of 2019-05-10.
Experiment type: XRAY
Resolution: 1.94 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: acetate kinase
    Species: Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) [TaxId:431947]
    Gene: ackA, PGN_1178
    Database cross-references and differences (RAF-indexed):
    • Uniprot B2RK02 (6-402)
      • expression tag (4-5)
    Domains in SCOPe 2.08: d6ioya1, d6ioya2, d6ioya3
  • Chain 'B':
    Compound: acetate kinase
    Species: Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) [TaxId:431947]
    Gene: ackA, PGN_1178
    Database cross-references and differences (RAF-indexed):
    • Uniprot B2RK02 (6-402)
      • expression tag (2-5)
    Domains in SCOPe 2.08: d6ioyb1, d6ioyb2, d6ioyb3
  • Chain 'C':
    Compound: acetate kinase
    Species: Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) [TaxId:431947]
    Gene: ackA, PGN_1178
    Database cross-references and differences (RAF-indexed):
    • Uniprot B2RK02 (6-End)
      • expression tag (4-5)
    Domains in SCOPe 2.08: d6ioyc1, d6ioyc2, d6ioyc3
  • Chain 'D':
    Compound: acetate kinase
    Species: Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / CIP 103683 / JCM 12257 / NCTC 11834 / 2561) [TaxId:431947]
    Gene: ackA, PGN_1178
    Database cross-references and differences (RAF-indexed):
    • Uniprot B2RK02 (6-End)
      • expression tag (4-5)
    Domains in SCOPe 2.08: d6ioyd1, d6ioyd2, d6ioyd3
  • Heterogens: MPD, SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ioyA (A:)
gshmaskvlvlncgsssvkykllempkgdvlaqggveklglpgsflkltmpngekvvlek
dmpehtiavefilsvlkddkygciksyeeidavghrlvhggekfsnsveitpeviakvee
ciplaplhnpanlkgvvaiekllpgirqvgvfdtaffqtmpehvyryalpydmcnkhgvr
rygfhgtshryvsaraceilgldydktriitahigngasiaaikngkaldvslgmtpveg
lmmgtrsgdvdpgvltflmeaeglqaagiselinkksgvlgvsgvssdlreiedaikngn
eratlamtmydyrikkyvgayaaamggvdvlvftggvgenqyttrekvctdmefmgivfd
skvnegmrgkemviskpeskvtvivvptdeeymiasdtmtilk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ioyA (A:)
askvlvlncgsssvkykllempkgdvlaqggveklglpgsflkltmpngekvvlekdmpe
htiavefilsvlkddkygciksyeeidavghrlvhggekfsnsveitpeviakveecipl
aplhnpanlkgvvaiekllpgirqvgvfdtaffqtmpehvyryalpydmcnkhgvrrygf
hgtshryvsaraceilgldydktriitahigngasiaaikngkaldvslgmtpveglmmg
trsgdvdpgvltflmeaeglqaagiselinkksgvlgvsgvssdlreiedaikngnerat
lamtmydyrikkyvgayaaamggvdvlvftggvgenqyttrekvctdmefmgivfdskvn
egmrgkemviskpeskvtvivvptdeeymiasdtmtilk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ioyB (B:)
gshmaskvlvlncgsssvkykllempkgdvlaqggveklglpgsflkltmpngekvvlek
dmpehtiavefilsvlkddkygciksyeeidavghrlvhggekfsnsveitpeviakvee
ciplaplhnpanlkgvvaiekllpgirqvgvfdtaffqtmpehvyryalpydmcnkhgvr
rygfhgtshryvsaraceilgldydktriitahigngasiaaikngkaldvslgmtpveg
lmmgtrsgdvdpgvltflmeaeglqaagiselinkksgvlgvsgvssdlreiedaikngn
eratlamtmydyrikkyvgayaaamggvdvlvftggvgenqyttrekvctdmefmgivfd
skvnegmrgkemviskpeskvtvivvptdeeymiasdtmtilk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ioyB (B:)
hmaskvlvlncgsssvkykllempkgdvlaqggveklglpgsflkltmpngekvvlekdm
pehtiavefilsvlkddkygciksyeeidavghrlvhggekfsnsveitpeviakveeci
plaplhnpanlkgvvaiekllpgirqvgvfdtaffqtmpehvyryalpydmcnkhgvrry
gfhgtshryvsaraceilgldydktriitahigngasiaaikngkaldvslgmtpveglm
mgtrsgdvdpgvltflmeaeglqaagiselinkksgvlgvsgvssdlreiedaikngner
atlamtmydyrikkyvgayaaamggvdvlvftggvgenqyttrekvctdmefmgivfdsk
vnegmrgkemviskpeskvtvivvptdeeymiasdtmtilk

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ioyC (C:)
gshmaskvlvlncgsssvkykllempkgdvlaqggveklglpgsflkltmpngekvvlek
dmpehtiavefilsvlkddkygciksyeeidavghrlvhggekfsnsveitpeviakvee
ciplaplhnpanlkgvvaiekllpgirqvgvfdtaffqtmpehvyryalpydmcnkhgvr
rygfhgtshryvsaraceilgldydktriitahigngasiaaikngkaldvslgmtpveg
lmmgtrsgdvdpgvltflmeaeglqaagiselinkksgvlgvsgvssdlreiedaikngn
eratlamtmydyrikkyvgayaaamggvdvlvftggvgenqyttrekvctdmefmgivfd
skvnegmrgkemviskpeskvtvivvptdeeymiasdtmtilk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ioyC (C:)
askvlvlncgsssvkykllempkgdvlaqggveklglpgsflkltmpngekvvlekdmpe
htiavefilsvlkddkygciksyeeidavghrlvhggekfsnsveitpeviakveecipl
aplhnpanlkgvvaiekllpgirqvgvfdtaffqtmpehvyryalpydmcnkhgvrrygf
hgtshryvsaraceilgldydktriitahigngasiaaikngkaldvslgmtpveglmmg
trsgdvdpgvltflmeaeglqaagiselinkksgvlgvsgvssdlreiedaikngnerat
lamtmydyrikkyvgayaaamggvdvlvftggvgenqyttrekvctdmefmgivfdskvn
egmrgkemviskpeskvtvivvptdeeymiasdtmtil

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ioyD (D:)
gshmaskvlvlncgsssvkykllempkgdvlaqggveklglpgsflkltmpngekvvlek
dmpehtiavefilsvlkddkygciksyeeidavghrlvhggekfsnsveitpeviakvee
ciplaplhnpanlkgvvaiekllpgirqvgvfdtaffqtmpehvyryalpydmcnkhgvr
rygfhgtshryvsaraceilgldydktriitahigngasiaaikngkaldvslgmtpveg
lmmgtrsgdvdpgvltflmeaeglqaagiselinkksgvlgvsgvssdlreiedaikngn
eratlamtmydyrikkyvgayaaamggvdvlvftggvgenqyttrekvctdmefmgivfd
skvnegmrgkemviskpeskvtvivvptdeeymiasdtmtilk

    Sequence, based on observed residues (ATOM records): (download) 
    >6ioyD (D:)
askvlvlncgsssvkykllempkgdvlaqggveklglpgsflkltmpngekvvlekdmpe
htiavefilsvlkddkygciksyeeidavghrlvhggekfsnsveitpeviakveecipl
aplhnpanlkgvvaiekllpgirqvgvfdtaffqtmpehvyryalpydmcnkhgvrrygf
hgtshryvsaraceilgldydktriitahigngasiaaikngkaldvslgmtpveglmmg
trsgdvdpgvltflmeaeglqaagiselinkksgvlgvsgvssdlreiedaikngnerat
lamtmydyrikkyvgayaaamggvdvlvftggvgenqyttrekvctdmefmgivfdskvn
egmrgkemviskpeskvtvivvptdeeymiasdtmtil