PDB entry 6iod

View 6iod on RCSB PDB site
Description: the structure of udgx in complex with single-stranded dna
Deposited on 2018-10-29, released 2019-07-31
The last revision was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 1.66 Å
R-factor: N/A
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Phage SPO1 DNA polymerase-related protein
    Species: Mycobacterium smegmatis MC2 155 [TaxId:246196]
    Gene: MSMEI_0259
    Database cross-references and differences (RAF-indexed):
    • Uniprot I7F541 (3-211)
      • expression tag (0-2)
  • Chain 'B':
    Compound: Phage SPO1 DNA polymerase-related protein
    Species: Mycobacterium smegmatis MC2 155 [TaxId:246196]
    Gene: MSMEI_0259
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA
    Species: Mycobacterium smegmatis, synthetic [TaxId:1772]
  • Chain 'D':
    Compound: DNA
    Species: Mycobacterium smegmatis, synthetic [TaxId:1772]
  • Heterogens: SF4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6iodA (A:)
gshmagaqdfvphtadlaelaaaagecrgcglyrdatqavfgaggrsarimmigeqpgdk
edlaglpfvgpagrlldraleaadidrdalyvtnavkhfkftraaggkrrihktpsrtev
vacrpwliaemtsvepdvvvllgataakallgndfrvtqhrgevlhvddvpgdpalvatv
hpssllrgpkeeresafaglvddlrvaadvrp

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iodB (B:)
gshmagaqdfvphtadlaelaaaagecrgcglyrdatqavfgaggrsarimmigeqpgdk
edlaglpfvgpagrlldraleaadidrdalyvtnavkhfkftraaggkrrihktpsrtev
vacrpwliaemtsvepdvvvllgataakallgndfrvtqhrgevlhvddvpgdpalvatv
hpssllrgpkeeresafaglvddlrvaadvrp

    Sequence, based on observed residues (ATOM records):
    >6iodB (B:)
magaqdfvphtadlaelaaaagecrgcglyrdatqavfgaggrsarimmigeqpgdkedl
aglpfvgpagrlldraleaadidrdalyvtnavkhfkftrrihktpsrtevvacrpwlia
emtsvepdvvvllgataakallgndfrvtqhrgevlhvdpalvatvhpssllrgpkeere
safaglvddlrvaadvr

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.