PDB entry 6io4

View 6io4 on RCSB PDB site
Description: silver-bound glyceraldehyde-3-phosphate dehydrogenase a
Deposited on 2018-10-29, released 2019-07-03
The last revision was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'B':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'C':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'D':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'E':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'F':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'G':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'H':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'I':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'J':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'K':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'L':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'M':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'N':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'O':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Chain 'P':
    Compound: glyceraldehyde-3-phosphate dehydrogenase a
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: gapA, b1779, JW1768
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0A9B2 (0-328)
      • engineered mutation (76)
  • Heterogens: AG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6io4A (A:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6io4B (B:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6io4C (C:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6io4D (D:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6io4E (E:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6io4F (F:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6io4G (G:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6io4H (H:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6io4I (I:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6io4J (J:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6io4K (K:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6io4L (L:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6io4M (M:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6io4N (N:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6io4O (O:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk

  • Chain 'P':
    Sequence; same for both SEQRES and ATOM records:
    >6io4P (P:)
ikvgingfgrigrivfraaqkrsdieivaindlldadymaymlkydsthgrfdgtvevkd
ghlivngkkirvtaergpanlkwdevgvdvvaeatglfltdetarkhitagakkvvmtgp
skdntpmfvkganfdkyagqdivsnascttnclaplakvindnfgiieglmttvhattat
qktvdgpshkdwrggrgasqniipsstgaakavgkvlpelngkltgmafrvptpnvsvvd
ltvrlekaatyeqikaavkaaaegemkgvlgyteddvvstdfngevctsvfdakagialn
dnfvklvswydnetgysnkvldliahisk