PDB entry 6imm

View 6imm on RCSB PDB site
Description: cryo-em structure of an alphavirus, sindbis virus
Deposited on 2018-10-23, released 2019-03-13
The last revision was dated 2019-03-13, with a file datestamp of 2019-03-08.
Experiment type: EM
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'N':
    Compound: Spike glycoprotein E1
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM (0-End)
  • Chain 'P':
    Compound: Spike glycoprotein E2
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM (0-End)
  • Chain 'R':
    Compound: Assembly protein E3
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM
  • Chain 'T':
    Compound: Spike glycoprotein E1
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM (0-End)
  • Chain 'V':
    Compound: Spike glycoprotein E2
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM (0-End)
  • Chain 'X':
    Compound: Assembly protein E3
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM
  • Chain 'Z':
    Compound: Spike glycoprotein E1
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM (0-End)
  • Chain 'a':
    Compound: Spike glycoprotein E1
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM (0-End)
  • Chain 'd':
    Compound: Spike glycoprotein E2
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM (0-End)
  • Chain 'e':
    Compound: Spike glycoprotein E2
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM (0-End)
  • Chain 'h':
    Compound: Assembly protein E3
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM
  • Chain 'i':
    Compound: Assembly protein E3
    Species: Sindbis virus [TaxId:11034]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IMM
  • Heterogens: 8K6

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'N':
    Sequence, based on SEQRES records:
    >6immN (N:)
fehattvpnvpripykalveragyaplnleitvmsselipstnleyvtckyttvvpspkv
kccgtlecssarhadynckvfggvypfmwggaqcfcdsensqmseayvefsadcaadhaq
avkvhtaalkaglrivygnttsmldvyvngvtpgtskdlkviagpisaaytpfdhkviih
kgkvynydfpeygamkpgafgdiqatsltsndliantdirllkpsaknvhvpytqaasgf
emwknnsgrplqetapfgcqiavnplravdcaygnipisldipnaafvrvsdaplvtalk
cevgecvysadfggiatlqyssdregqcsvhshsstatlqestvhvlqkggatihfstas
pqanfivslcgkkttcnaeckppadhivnvphkndqefqaavsqtswswlfalfggassl
lvigvmifacsalltstrr

    Sequence, based on observed residues (ATOM records):
    >6immN (N:)
fehattvpnvpripykalveragyaplnleitvmsselipstnleyvtckyttvvpspkv
kccgtlecssarhadynckvfggvypensqmseayvefsadcaadhaqavkvhtaalkag
lrivygnttsmldvyvngvtpgtskdlkviagpisaaytpfdhkviihkgkvynydfpey
gamkpgafgdiqatsltsndliantdirllkpsaknvhvpytqaasgfemwknnsgrplq
etapfgcqiavnplravdcaygnipisldipnaafvrvsdaplvtalkcevgecvysadf
ggiatlqyssdregqcsvhshsstatlqestvhvlqkggatihfstaspqanfivslcgk
kttcnaeckppadhivnvphkndqefqaavsqtswswlfalfggassllvigvmifacsa
llt

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6immP (P:)
ftltspylgtcsychhtepcfspvkieqvwdeaddntiriqtsaqfgydqsgaasvnkyr
imslkqdhtieegsmdaikistsgpcrrlnhkgyfllakcppgdsvtvsisagdsatsct
larkvkpkfvgrekydlppvhgkkipcyiydrlketsagyitmhrpgphayatyleessg
kvyakppsgknityksdqtkwvfnspdlirhadhtaqgkmhlpfklvpstclvplahvpq
vvhgfkhislqldtdhltllttrrlgekpeptsewiigktvrnfsvgrdgfeyiwgnhep
vrvwaqesapgdphgwpheivqhyyhrhpvytvmilvaatlaivlgvsvasvcvcrarre
cltpyalapnavvptsiallccirptsa

    Sequence, based on observed residues (ATOM records):
    >6immP (P:)
ftltspylgtcsychhtepcfspvkieqvwdeaddntiriqtsaqfgydqsgaasvnkyr
imslkqdhtieegsmdaikistsgpcrrlnhkgyfllakcppgdsvtvsitsctlarkvk
pkfvgrekydlppvhgkkipcyiydrlketsagyitmhrptkwvfnspdlirhadhtaqg
kmhlpfklvpstclvplahvpqvvhgfkhislqldtdhltllttrrlgekpeptsewiig
ktvrnfsvgrdgfeyiwgnhepvrvwaqesapgdphgwpheivqhyyhrhpvytvmilva
atlaivlgvsvasvcvcrarreclt

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6immR (R:)
saaplvaamcilgnmtfpcnqpptcysreparaldileanvdsaayddlmravlrctpss
rakrnitdd

    Sequence, based on observed residues (ATOM records):
    >6immR (R:)
amcilgnmtfpcnqpptcysreparaldileanvdsaayddlmravl

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6immT (T:)
fehattvpnvpripykalveragyaplnleitvmsselipstnleyvtckyttvvpspkv
kccgtlecssarhadynckvfggvypfmwggaqcfcdsensqmseayvefsadcaadhaq
avkvhtaalkaglrivygnttsmldvyvngvtpgtskdlkviagpisaaytpfdhkviih
kgkvynydfpeygamkpgafgdiqatsltsndliantdirllkpsaknvhvpytqaasgf
emwknnsgrplqetapfgcqiavnplravdcaygnipisldipnaafvrvsdaplvtalk
cevgecvysadfggiatlqyssdregqcsvhshsstatlqestvhvlqkggatihfstas
pqanfivslcgkkttcnaeckppadhivnvphkndqefqaavsqtswswlfalfggassl
lvigvmifacsalltstrr

    Sequence, based on observed residues (ATOM records):
    >6immT (T:)
fehattvpnvpripykalveragyaplnleitvmsselipstnleyvtckyttvvpspkv
kccgtlecssarhadynckvfggvypensqmseayvefsadcaadhaqavkvhtaalkag
lrivygnttsmldvyvngvtpgtskdlkviagpisaaytpfdhkviihkgkvynydfpey
gamkpgafgdiqatsltsndliantdirllkpsaknvhvpytqaasgfemwknnsgrplq
etapfgcqiavnplravdcaygnipisldipnaafvrvsdaplvtalkcevgecvysadf
ggiatlqyssdregqcsvhshsstatlqestvhvlqkggatihfstaspqanfivslcgk
kttcnaeckppadhivnvphkndqefqaavsqtswswlfalfggassllvigvmifacsa
llt

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6immV (V:)
ftltspylgtcsychhtepcfspvkieqvwdeaddntiriqtsaqfgydqsgaasvnkyr
imslkqdhtieegsmdaikistsgpcrrlnhkgyfllakcppgdsvtvsisagdsatsct
larkvkpkfvgrekydlppvhgkkipcyiydrlketsagyitmhrpgphayatyleessg
kvyakppsgknityksdqtkwvfnspdlirhadhtaqgkmhlpfklvpstclvplahvpq
vvhgfkhislqldtdhltllttrrlgekpeptsewiigktvrnfsvgrdgfeyiwgnhep
vrvwaqesapgdphgwpheivqhyyhrhpvytvmilvaatlaivlgvsvasvcvcrarre
cltpyalapnavvptsiallccirptsa

    Sequence, based on observed residues (ATOM records):
    >6immV (V:)
ftltspylgtcsychhtepcfspvkieqvwdeaddntiriqtsaqfgydqsgaasvnkyr
imslkqdhtieegsmdaikistsgpcrrlnhkgyfllakcppgdsvtvsitsctlarkvk
pkfvgrekydlppvhgkkipcyiydrlketsagyitmhrptkwvfnspdlirhadhtaqg
kmhlpfklvpstclvplahvpqvvhgfkhislqldtdhltllttrrlgekpeptsewiig
ktvrnfsvgrdgfeyiwgnhepvrvwaqesapgdphgwpheivqhyyhrhpvytvmilva
atlaivlgvsvasvcvcrarreclt

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6immX (X:)
saaplvaamcilgnmtfpcnqpptcysreparaldileanvdsaayddlmravlrctpss
rakrnitdd

    Sequence, based on observed residues (ATOM records):
    >6immX (X:)
amcilgnmtfpcnqpptcysreparaldileanvdsaayddlmravl

  • Chain 'Z':
    Sequence, based on SEQRES records:
    >6immZ (Z:)
fehattvpnvpripykalveragyaplnleitvmsselipstnleyvtckyttvvpspkv
kccgtlecssarhadynckvfggvypfmwggaqcfcdsensqmseayvefsadcaadhaq
avkvhtaalkaglrivygnttsmldvyvngvtpgtskdlkviagpisaaytpfdhkviih
kgkvynydfpeygamkpgafgdiqatsltsndliantdirllkpsaknvhvpytqaasgf
emwknnsgrplqetapfgcqiavnplravdcaygnipisldipnaafvrvsdaplvtalk
cevgecvysadfggiatlqyssdregqcsvhshsstatlqestvhvlqkggatihfstas
pqanfivslcgkkttcnaeckppadhivnvphkndqefqaavsqtswswlfalfggassl
lvigvmifacsalltstrr

    Sequence, based on observed residues (ATOM records):
    >6immZ (Z:)
fehattvpnvpripykalveragyaplnleitvmsselipstnleyvtckyttvvpspkv
kccgtlecssarhadynckvfggvypensqmseayvefsadcaadhaqavkvhtaalkag
lrivygnttsmldvyvngvtpgtskdlkviagpisaaytpfdhkviihkgkvynydfpey
gamkpgafgdiqatsltsndliantdirllkpsaknvhvpytqaasgfemwknnsgrplq
etapfgcqiavnplravdcaygnipisldipnaafvrvsdaplvtalkcevgecvysadf
ggiatlqyssdregqcsvhshsstatlqestvhvlqkggatihfstaspqanfivslcgk
kttcnaeckppadhivnvphkndqefqaavsqtswswlfalfggassllvigvmifacsa
llt

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6imma (a:)
fehattvpnvpripykalveragyaplnleitvmsselipstnleyvtckyttvvpspkv
kccgtlecssarhadynckvfggvypfmwggaqcfcdsensqmseayvefsadcaadhaq
avkvhtaalkaglrivygnttsmldvyvngvtpgtskdlkviagpisaaytpfdhkviih
kgkvynydfpeygamkpgafgdiqatsltsndliantdirllkpsaknvhvpytqaasgf
emwknnsgrplqetapfgcqiavnplravdcaygnipisldipnaafvrvsdaplvtalk
cevgecvysadfggiatlqyssdregqcsvhshsstatlqestvhvlqkggatihfstas
pqanfivslcgkkttcnaeckppadhivnvphkndqefqaavsqtswswlfalfggassl
lvigvmifacsalltstrr

    Sequence, based on observed residues (ATOM records):
    >6imma (a:)
fehattvpnvpripykalveragyaplnleitvmsselipstnleyvtckyttvvpspkv
kccgtlecssarhadynckvfggvypensqmseayvefsadcaadhaqavkvhtaalkag
lrivygnttsmldvyvngvtpgtskdlkviagpisaaytpfdhkviihkgkvynydfpey
gamkpgafgdiqatsltsndliantdirllkpsaknvhvpytqaasgfemwknnsgrplq
etapfgcqiavnplravdcaygnipisldipnaafvrvsdaplvtalkcevgecvysadf
ggiatlqyssdregqcsvhshsstatlqestvhvlqkggatihfstaspqanfivslcgk
kttcnaeckppadhivnvphkndqefqaavsqtswswlfalfggassllvigvmifacsa
llt

  • Chain 'd':
    Sequence, based on SEQRES records:
    >6immd (d:)
ftltspylgtcsychhtepcfspvkieqvwdeaddntiriqtsaqfgydqsgaasvnkyr
imslkqdhtieegsmdaikistsgpcrrlnhkgyfllakcppgdsvtvsisagdsatsct
larkvkpkfvgrekydlppvhgkkipcyiydrlketsagyitmhrpgphayatyleessg
kvyakppsgknityksdqtkwvfnspdlirhadhtaqgkmhlpfklvpstclvplahvpq
vvhgfkhislqldtdhltllttrrlgekpeptsewiigktvrnfsvgrdgfeyiwgnhep
vrvwaqesapgdphgwpheivqhyyhrhpvytvmilvaatlaivlgvsvasvcvcrarre
cltpyalapnavvptsiallccirptsa

    Sequence, based on observed residues (ATOM records):
    >6immd (d:)
ftltspylgtcsychhtepcfspvkieqvwdeaddntiriqtsaqfgydqsgaasvnkyr
imslkqdhtieegsmdaikistsgpcrrlnhkgyfllakcppgdsvtvsitsctlarkvk
pkfvgrekydlppvhgkkipcyiydrlketsagyitmhrptkwvfnspdlirhadhtaqg
kmhlpfklvpstclvplahvpqvvhgfkhislqldtdhltllttrrlgekpeptsewiig
ktvrnfsvgrdgfeyiwgnhepvrvwaqesapgdphgwpheivqhyyhrhpvytvmilva
atlaivlgvsvasvcvcrarreclt

  • Chain 'e':
    Sequence, based on SEQRES records:
    >6imme (e:)
ftltspylgtcsychhtepcfspvkieqvwdeaddntiriqtsaqfgydqsgaasvnkyr
imslkqdhtieegsmdaikistsgpcrrlnhkgyfllakcppgdsvtvsisagdsatsct
larkvkpkfvgrekydlppvhgkkipcyiydrlketsagyitmhrpgphayatyleessg
kvyakppsgknityksdqtkwvfnspdlirhadhtaqgkmhlpfklvpstclvplahvpq
vvhgfkhislqldtdhltllttrrlgekpeptsewiigktvrnfsvgrdgfeyiwgnhep
vrvwaqesapgdphgwpheivqhyyhrhpvytvmilvaatlaivlgvsvasvcvcrarre
cltpyalapnavvptsiallccirptsa

    Sequence, based on observed residues (ATOM records):
    >6imme (e:)
ftltspylgtcsychhtepcfspvkieqvwdeaddntiriqtsaqfgydqsgaasvnkyr
imslkqdhtieegsmdaikistsgpcrrlnhkgyfllakcppgdsvtvsitsctlarkvk
pkfvgrekydlppvhgkkipcyiydrlketsagyitmhrptkwvfnspdlirhadhtaqg
kmhlpfklvpstclvplahvpqvvhgfkhislqldtdhltllttrrlgekpeptsewiig
ktvrnfsvgrdgfeyiwgnhepvrvwaqesapgdphgwpheivqhyyhrhpvytvmilva
atlaivlgvsvasvcvcrarreclt

  • Chain 'h':
    Sequence, based on SEQRES records:
    >6immh (h:)
saaplvaamcilgnmtfpcnqpptcysreparaldileanvdsaayddlmravlrctpss
rakrnitdd

    Sequence, based on observed residues (ATOM records):
    >6immh (h:)
amcilgnmtfpcnqpptcysreparaldileanvdsaayddlmravl

  • Chain 'i':
    Sequence, based on SEQRES records:
    >6immi (i:)
saaplvaamcilgnmtfpcnqpptcysreparaldileanvdsaayddlmravlrctpss
rakrnitdd

    Sequence, based on observed residues (ATOM records):
    >6immi (i:)
amcilgnmtfpcnqpptcysreparaldileanvdsaayddlmravl