PDB entry 6imj

View 6imj on RCSB PDB site
Description: the crystal structure of se-asfvlig:dna complex
Deposited on 2018-10-23, released 2019-02-27
The last revision was dated 2019-02-27, with a file datestamp of 2019-02-22.
Experiment type: XRAY
Resolution: 2.55 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA ligase
    Species: African swine fever virus [TaxId:10497]
    Gene: NP419L, AFSV47Ss_0152
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: DNA ligase
    Species: African swine fever virus [TaxId:10497]
    Gene: NP419L, AFSV47Ss_0152
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: DNA (5'-d(*tp*c*cp*gp*gp*gp*ap*tp*gp*cp*tp*gp*gp*tp*cp*gp*gp*ap*cp*tp*gp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'D':
    Compound: DNA (5'-d(*c*cp*ap*gp*tp*cp*cp*gp*ap*cp*cp*cp*gp*cp*ap*tp*cp*cp*cp*gp*gp*a)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: ATP, CD, CL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6imjA (A:)
mlnqfpgqysnnifcfppiesetksgkkaswiicvqvvqhntiipitdemfstdvkdava
eiftkffveegavriskmtrvtegknlgkknattvvhqafkdalskynrharqkrgahtn
rgmippmlvkyfniipktffeeetdpivqrkrngvravacqqgdgcillysrtekeflgl
dnikkelkqlylfidvrvyldgelylhrkplqwiagqanaktdsselhfyvfdcfwsdql
qmpsnkrqqlltnifkqkedltfihqvenfsvknvdealrlkaqfikegyegaivrnang
pyepgynnyhsahlaklkplldaefilvdytqgkkgkdlgailwvcelpnkkrfvvtpkh
ltyadryalfqkltpalfkkhlygkeltveyaelspktgiplqaravgfrepinvleii

    Sequence, based on observed residues (ATOM records):
    >6imjA (A:)
mlnqfpgqysnnifcfppiesetksgkkaswiicvqvvqhntiipitdemfstdvkdava
eiftkffveegavriskmtrvtegknlgkknattvvhqafkdalskynrharqkrrgmip
pmlvkyfniipktffeeetdpivqrkrngvravacqqgdgcillysrtekeflgldnikk
elkqlylfidvrvyldgelylhrkplqwiagqanaktdsselhfyvfdcfwsdqlqmpsn
krqqlltnifkqkedltfihqvenfsvknvdealrlkaqfikegyegaivrnangpyepg
ynnyhsahlaklkplldaefilvdytqgkkgkdlgailwvcelpnkkrfvvtpkhltyad
ryalfqkltpalfkkhlygkeltveyaelspgiplqaravgfrepinvleii

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6imjB (B:)
mlnqfpgqysnnifcfppiesetksgkkaswiicvqvvqhntiipitdemfstdvkdava
eiftkffveegavriskmtrvtegknlgkknattvvhqafkdalskynrharqkrgahtn
rgmippmlvkyfniipktffeeetdpivqrkrngvravacqqgdgcillysrtekeflgl
dnikkelkqlylfidvrvyldgelylhrkplqwiagqanaktdsselhfyvfdcfwsdql
qmpsnkrqqlltnifkqkedltfihqvenfsvknvdealrlkaqfikegyegaivrnang
pyepgynnyhsahlaklkplldaefilvdytqgkkgkdlgailwvcelpnkkrfvvtpkh
ltyadryalfqkltpalfkkhlygkeltveyaelspktgiplqaravgfrepinvleii

    Sequence, based on observed residues (ATOM records):
    >6imjB (B:)
mlnqfpgqysnnifcfppiesetksgkkaswiicvqvvqhntiipitdemfstdvkdava
eiftkffveegavriskmtrvtegknlgkknattvvhqafkdalskynrharqkrrgmip
pmlvkyfniipktffeeetdpivqrkrngvravacqqgdgcillysrtekeflgldnikk
elkqlylfidvrvyldgelylhrkplqwiagqanaksselhfyvfdcfwsdqlqmpsnkr
qqlltnifkqkedltfihqvenfsvknvdealrlkaqfikegyegaivrnangpyepgyn
nyhsahlaklkplldaefilvdytqgkkgkdlgailwvcelpnkkrfvvtpkhltyadry
alfqkltpalfkkhlygkeltveyaelsptgiplqaravgfrepinvleii

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.