PDB entry 6imc

View 6imc on RCSB PDB site
Description: crystal structure of alkbh1 in complex with mn(ii) and n-oxalylglycine
Deposited on 2018-10-22, released 2020-01-22
The last revision was dated 2020-04-08, with a file datestamp of 2020-04-03.
Experiment type: XRAY
Resolution: 2.51 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Nucleic acid dioxygenase ALKBH1
    Species: Mus musculus [TaxId:10090]
    Gene: Alkbh1, Abh, Alkbh
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Nucleic acid dioxygenase ALKBH1
    Species: Mus musculus [TaxId:10090]
    Gene: Alkbh1, Abh, Alkbh
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Nucleic acid dioxygenase ALKBH1
    Species: Mus musculus [TaxId:10090]
    Gene: Alkbh1, Abh, Alkbh
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Nucleic acid dioxygenase ALKBH1
    Species: Mus musculus [TaxId:10090]
    Gene: Alkbh1, Abh, Alkbh
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MN, OGA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6imcA (A:)
gpmgkmaaavaslatlaaepredafrklfrfyrqsrpgtadlgavidfseahlarspkpg
vpqvvrfplnvssvterdaervglepvskwrayglegypgfifipnpflpgcqrhwvkqc
lklysqkpnvcnldkhmtkeetqglweqskevlrskevtkrrprsllerlrwvtlgyhyn
wdskkysadhytpfpsdlaflseqvatacgfqgfqaeagilnyyrldstlgihvdrseld
hskpllsfsfgqsaifllgglkrdeaptamfmhsgdimvmsgfsrllnhavprvlphpdg
eclphcletplpavlpsnslvepcsvedwqvcatylrtarvnmtvrqvlatgqdfplepv
e

    Sequence, based on observed residues (ATOM records):
    >6imcA (A:)
edafrklfrfyrqsrpgtadlgavidfseahlarspkpgvpqvvrfplnvssvterdaer
vglepvskwrayglegypgfifipnpflpgcqrhwvkqclklysqkpnvcnldkhmtkee
tqglweqskevlrskevtkrrprsllerlrwvtlgyhynwdskkysadhytpfpsdlafl
seqvatacgfqgfqaeagilnyyrldstlgihvdrseldhskpllsfsfgqsaifllggl
krdeaptamfmhsgdimvmsgfsrllnhavprvlphpdgeclphcletplpavlpsnslv
epcsvedwqvcatylrtarvnmtvrqvlatgqdfplepv

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6imcB (B:)
gpmgkmaaavaslatlaaepredafrklfrfyrqsrpgtadlgavidfseahlarspkpg
vpqvvrfplnvssvterdaervglepvskwrayglegypgfifipnpflpgcqrhwvkqc
lklysqkpnvcnldkhmtkeetqglweqskevlrskevtkrrprsllerlrwvtlgyhyn
wdskkysadhytpfpsdlaflseqvatacgfqgfqaeagilnyyrldstlgihvdrseld
hskpllsfsfgqsaifllgglkrdeaptamfmhsgdimvmsgfsrllnhavprvlphpdg
eclphcletplpavlpsnslvepcsvedwqvcatylrtarvnmtvrqvlatgqdfplepv
e

    Sequence, based on observed residues (ATOM records):
    >6imcB (B:)
edafrklfrfyrqsrpgtadlgavidfseahlarspkpgvpqvvrfplnvssvterdaer
vglepvskwrayglegypgfifipnpflpgcqrhwvkqclklysqkpnvcnldkhmtkee
tqglweqskevlrskevtkrrprsllerlrwvtlgyhynwdskkysadhytpfpsdlafl
seqvatacgfqgfqaeagilnyyrldstlgihvdrseldhskpllsfsfgqsaifllggl
krdeaptamfmhsgdimvmsgfsrllnhavprvlphpdgeclphcletplpavlpsnslv
epcsvedwqvcatylrtarvnmtvrqvlatgqdfplepv

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6imcC (C:)
gpmgkmaaavaslatlaaepredafrklfrfyrqsrpgtadlgavidfseahlarspkpg
vpqvvrfplnvssvterdaervglepvskwrayglegypgfifipnpflpgcqrhwvkqc
lklysqkpnvcnldkhmtkeetqglweqskevlrskevtkrrprsllerlrwvtlgyhyn
wdskkysadhytpfpsdlaflseqvatacgfqgfqaeagilnyyrldstlgihvdrseld
hskpllsfsfgqsaifllgglkrdeaptamfmhsgdimvmsgfsrllnhavprvlphpdg
eclphcletplpavlpsnslvepcsvedwqvcatylrtarvnmtvrqvlatgqdfplepv
e

    Sequence, based on observed residues (ATOM records):
    >6imcC (C:)
edafrklfrfyrqsrpgtadlgavidfseahlarspkpgvpqvvrfplnvssvterdaer
vglepvskwrayglegypgfifipnpflpgcqrhwvkqclklysqkpnvcnldkhmtkee
tqglweqskevlrskevtkrrprsllerlrwvtlgyhynwdskkysadhytpfpsdlafl
seqvatacgfqgfqaeagilnyyrldstlgihvdrseldhskpllsfsfgqsaifllggl
krdeaptamfmhsgdimvmsgfsrllnhavprvlphpdgeclphcletplpavlpsnslv
epcsvedwqvcatylrtarvnmtvrqvlatgqdfplepv

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6imcD (D:)
gpmgkmaaavaslatlaaepredafrklfrfyrqsrpgtadlgavidfseahlarspkpg
vpqvvrfplnvssvterdaervglepvskwrayglegypgfifipnpflpgcqrhwvkqc
lklysqkpnvcnldkhmtkeetqglweqskevlrskevtkrrprsllerlrwvtlgyhyn
wdskkysadhytpfpsdlaflseqvatacgfqgfqaeagilnyyrldstlgihvdrseld
hskpllsfsfgqsaifllgglkrdeaptamfmhsgdimvmsgfsrllnhavprvlphpdg
eclphcletplpavlpsnslvepcsvedwqvcatylrtarvnmtvrqvlatgqdfplepv
e

    Sequence, based on observed residues (ATOM records):
    >6imcD (D:)
redafrklfrfyrqsrpgtadlgavidfseahlarspkpgvpqvvrfplnvssvterdae
rvglepvskwrayglegypgfifipnpflpgcqrhwvkqclklysqkpnvcnldkhmtke
etqglweqskevlrskevtkrrprsllerlrwvtlgyhynwdskkysadhytpfpsdlaf
lseqvatacgfqgfqaeagilnyyrldstlgihvdrseldhskpllsfsfgqsaifllgg
lkrdeaptamfmhsgdimvmsgfsrllnhavprvlphpdgeclphcletplpavlpsnsl
vepcsvedwqvcatylrtarvnmtvrqvlatgqdfplepv