PDB entry 6im3

View 6im3 on RCSB PDB site
Description: Crystal structure of a highly thermostable carbonic anhydrase from Persephonella marina EX-H1
Class: lyase
Keywords: Carbonic anhydrase, Zinc metalloenzyme, Persephonella marina EX-H1, CO2 mineralization, CO2 capture and storage, LYASE
Deposited on 2018-10-22, released 2019-07-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-31, with a file datestamp of 2019-07-26.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Carbonic anhydrase (Carbonate dehydratase)
    Species: Persephonella marina (strain DSM 14350 / EX-H1) [TaxId:123214]
    Gene: PERMA_1443
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6im3a_
  • Chain 'B':
    Compound: Carbonic anhydrase (Carbonate dehydratase)
    Species: Persephonella marina (strain DSM 14350 / EX-H1) [TaxId:123214]
    Gene: PERMA_1443
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6im3b_
  • Chain 'C':
    Compound: Carbonic anhydrase (Carbonate dehydratase)
    Species: Persephonella marina (strain DSM 14350 / EX-H1) [TaxId:123214]
    Gene: PERMA_1443
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6im3c_
  • Chain 'D':
    Compound: Carbonic anhydrase (Carbonate dehydratase)
    Species: Persephonella marina (strain DSM 14350 / EX-H1) [TaxId:123214]
    Gene: PERMA_1443
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6im3d_
  • Chain 'E':
    Compound: Carbonic anhydrase (Carbonate dehydratase)
    Species: Persephonella marina (strain DSM 14350 / EX-H1) [TaxId:123214]
    Gene: PERMA_1443
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6im3e_
  • Chain 'F':
    Compound: Carbonic anhydrase (Carbonate dehydratase)
    Species: Persephonella marina (strain DSM 14350 / EX-H1) [TaxId:123214]
    Gene: PERMA_1443
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6im3f_
  • Heterogens: AZM, CA, PG4, ZN, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6im3A (A:)
mkkfvvglsslvlatssfagggwsyhgehgpehwgdlkdeyimckigknqspvdinrivd
aklkpikieyragatkvlnnghtikvsyepgsyivvdgikfelkqfhfhapsehklkgqh
ypfeahfvhadkhgnlavigvffkegrenpilekiwkvmpenageevklahkinaedllp
kdrdyyrysgslttppcsegvrwivmeeememskeqiekfrkimggdtnrpvqplnarmi
mek

    Sequence, based on observed residues (ATOM records): (download) 
    >6im3A (A:)
gwsyhgehgpehwgdlkdeyimckigknqspvdinrivdaklkpikieyragatkvlnng
htikvsyepgsyivvdgikfelkqfhfhapsehklkgqhypfeahfvhadkhgnlavigv
ffkegrenpilekiwkvmpenageevklahkinaedllpkdrdyyrysgslttppcsegv
rwivmeeememskeqiekfrkimggdtnrpvqplnarmimek

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6im3B (B:)
mkkfvvglsslvlatssfagggwsyhgehgpehwgdlkdeyimckigknqspvdinrivd
aklkpikieyragatkvlnnghtikvsyepgsyivvdgikfelkqfhfhapsehklkgqh
ypfeahfvhadkhgnlavigvffkegrenpilekiwkvmpenageevklahkinaedllp
kdrdyyrysgslttppcsegvrwivmeeememskeqiekfrkimggdtnrpvqplnarmi
mek

    Sequence, based on observed residues (ATOM records): (download) 
    >6im3B (B:)
gwsyhgehgpehwgdlkdeyimckigknqspvdinrivdaklkpikieyragatkvlnng
htikvsyepgsyivvdgikfelkqfhfhapsehklkgqhypfeahfvhadkhgnlavigv
ffkegrenpilekiwkvmpenageevklahkinaedllpkdrdyyrysgslttppcsegv
rwivmeeememskeqiekfrkimggdtnrpvqplnarmimek

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6im3C (C:)
mkkfvvglsslvlatssfagggwsyhgehgpehwgdlkdeyimckigknqspvdinrivd
aklkpikieyragatkvlnnghtikvsyepgsyivvdgikfelkqfhfhapsehklkgqh
ypfeahfvhadkhgnlavigvffkegrenpilekiwkvmpenageevklahkinaedllp
kdrdyyrysgslttppcsegvrwivmeeememskeqiekfrkimggdtnrpvqplnarmi
mek

    Sequence, based on observed residues (ATOM records): (download) 
    >6im3C (C:)
gwsyhgehgpehwgdlkdeyimckigknqspvdinrivdaklkpikieyragatkvlnng
htikvsyepgsyivvdgikfelkqfhfhapsehklkgqhypfeahfvhadkhgnlavigv
ffkegrenpilekiwkvmpenageevklahkinaedllpkdrdyyrysgslttppcsegv
rwivmeeememskeqiekfrkimggdtnrpvqplnarmimek

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6im3D (D:)
mkkfvvglsslvlatssfagggwsyhgehgpehwgdlkdeyimckigknqspvdinrivd
aklkpikieyragatkvlnnghtikvsyepgsyivvdgikfelkqfhfhapsehklkgqh
ypfeahfvhadkhgnlavigvffkegrenpilekiwkvmpenageevklahkinaedllp
kdrdyyrysgslttppcsegvrwivmeeememskeqiekfrkimggdtnrpvqplnarmi
mek

    Sequence, based on observed residues (ATOM records): (download) 
    >6im3D (D:)
gwsyhgehgpehwgdlkdeyimckigknqspvdinrivdaklkpikieyragatkvlnng
htikvsyepgsyivvdgikfelkqfhfhapsehklkgqhypfeahfvhadkhgnlavigv
ffkegrenpilekiwkvmpenageevklahkinaedllpkdrdyyrysgslttppcsegv
rwivmeeememskeqiekfrkimggdtnrpvqplnarmimek

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6im3E (E:)
mkkfvvglsslvlatssfagggwsyhgehgpehwgdlkdeyimckigknqspvdinrivd
aklkpikieyragatkvlnnghtikvsyepgsyivvdgikfelkqfhfhapsehklkgqh
ypfeahfvhadkhgnlavigvffkegrenpilekiwkvmpenageevklahkinaedllp
kdrdyyrysgslttppcsegvrwivmeeememskeqiekfrkimggdtnrpvqplnarmi
mek

    Sequence, based on observed residues (ATOM records): (download) 
    >6im3E (E:)
gwsyhgehgpehwgdlkdeyimckigknqspvdinrivdaklkpikieyragatkvlnng
htikvsyepgsyivvdgikfelkqfhfhapsehklkgqhypfeahfvhadkhgnlavigv
ffkegrenpilekiwkvmpenageevklahkinaedllpkdrdyyrysgslttppcsegv
rwivmeeememskeqiekfrkimggdtnrpvqplnarmimek

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6im3F (F:)
mkkfvvglsslvlatssfagggwsyhgehgpehwgdlkdeyimckigknqspvdinrivd
aklkpikieyragatkvlnnghtikvsyepgsyivvdgikfelkqfhfhapsehklkgqh
ypfeahfvhadkhgnlavigvffkegrenpilekiwkvmpenageevklahkinaedllp
kdrdyyrysgslttppcsegvrwivmeeememskeqiekfrkimggdtnrpvqplnarmi
mek

    Sequence, based on observed residues (ATOM records): (download) 
    >6im3F (F:)
gwsyhgehgpehwgdlkdeyimckigknqspvdinrivdaklkpikieyragatkvlnng
htikvsyepgsyivvdgikfelkqfhfhapsehklkgqhypfeahfvhadkhgnlavigv
ffkegrenpilekiwkvmpenageevklahkinaedllpkdrdyyrysgslttppcsegv
rwivmeeememskeqiekfrkimggdtnrpvqplnarmimek