PDB entry 6ilo

View 6ilo on RCSB PDB site
Description: cryo-em structure of empty echovirus 6 particle at ph 7.4
Deposited on 2018-10-19, released 2019-05-15
The last revision was dated 2019-06-12, with a file datestamp of 2019-06-07.
Experiment type: EM
Resolution: 3.2 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILO (0-226)
  • Chain 'B':
    Compound: capsid protein VP2
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILO (0-248)
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILO (0-233)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6iloA (A:)
hvrsessvenflsrsacvyiveyktrddtpdkmydswvintrqvaqlrrklefftyvrfd
vevtfvitsvqddstrqntdtpalthqimyvppggpipqavddynwqtstnpsvfwtegn
apprmsipfmsvgnaysnfydgwshfsqtgvygfntlnnmgklyfrhvndktispitskv
riyfkpkhvkawvprpprlceythkdnvdfepkgvttsrtqltisns

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iloB (B:)
sdrvrsitlgnstittqesanvvvgygvwpdylsdeeataedqptqpdvatcrfytldsv
swmkesqgwwwkfpdalrdmglfgqnmqyhylgrsgytihvqcnaskfhqgcllvvcvpe
aemgaaninekinrehlsngevantfsgtkssntndvqqavfnagmgvavgnltifphqw
inlrtnncativmpyinsvpmdnmfrhynftlmiipfakldyaagsstyipitvtvapmc
aeynglrlg

    Sequence, based on observed residues (ATOM records):
    >6iloB (B:)
sdrvrsitlgnstittqesanvvvgygvwpdylsdqptqpdvatcrfytldsvswmkesq
gwwwkfpdalrdmglfgqnmqyhylgrsgytihvqcnaskfhqgcllvvcvpeaemgaan
inekinrehlsngevantfsgtkssntndvqqavfnagmgvavgnltifphqwinlrtnn
cativmpyinsvpmdnmfrhynftlmiipfakldyaagsstyipitvtvapmcaeynglr
lg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iloC (C:)
glpvmntpgsnqfltsddyqsptampqfdvtpemnipgevknlmeiaevdsvvpvnnvne
nvnsleayripvhsvtetgaqvfgftlqpgadtvmertllgeilnyyanwsgsikltfmy
cgsamatgkfllaysppgagvpknrreamlgthiiwdiglqsscvlcvpwisqthyrfvs
kdsytdagfitcwyqtsivvpaevqnqsvilcfvsacndfsvrllrdspfvrqt

    Sequence, based on observed residues (ATOM records):
    >6iloC (C:)
glpvmntpgsnqfltsddyqsptampqfdvtpemnipgevknlmeiaevdsvvpvnnvne
nvnsleayripvhsvtetgaqvfgftlqpgadtvmertllgeilnyyanwsgsikltfmy
cgsamatgkfllaysppgagvpknrreamlgthiiwdiglqsscvlcvpwisqthdagfi
tcwyqtsivvpaevqnqsvilcfvsacndfsvrllrdspfvrqt