PDB entry 6ilm

View 6ilm on RCSB PDB site
Description: cryo-em structure of echovirus 6 complexed with its uncoating receptor fcrn at ph 7.4
Deposited on 2018-10-19, released 2019-05-15
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILM (0-288)
  • Chain 'B':
    Compound: capsid protein VP2
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILM (0-251)
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILM (0-237)
  • Chain 'D':
    Compound: capsid protein VP4
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILM (0-67)
  • Chain 'E':
    Compound: igg receptor fcrn large subunit p51
    Species: Homo sapiens [TaxId:9606]
    Gene: FCRN
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Beta-2-microglobulin
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: K, SPH, NA

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6ilmA (A:)
ndvqnaidravvrvadtmpsgpsnsesipaltaaetghtsqvvpsdtiqtrhvrnfhvrs
essvenflsrsacvyiveyktrddtpdkmydswvintrqvaqlrrklefftyvrfdvevt
fvitsvqddstrqntdtpalthqimyvppggpipqavddynwqtstnpsvfwtegnappr
msipfmsvgnaysnfydgwshfsqtgvygfntlnnmgklyfrhvndktispitskvriyf
kpkhvkawvprpprlceythkdnvdfepkgvttsrtqltisnsthveny

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6ilmB (B:)
sdrvrsitlgnstittqesanvvvgygvwpdylsdeeataedqptqpdvatcrfytldsv
swmkesqgwwwkfpdalrdmglfgqnmqyhylgrsgytihvqcnaskfhqgcllvvcvpe
aemgaaninekinrehlsngevantfsgtkssntndvqqavfnagmgvavgnltifphqw
inlrtnncativmpyinsvpmdnmfrhynftlmiipfakldyaagsstyipitvtvapmc
aeynglrlaghq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6ilmC (C:)
glpvmntpgsnqfltsddyqsptampqfdvtpemnipgevknlmeiaevdsvvpvnnvne
nvnsleayripvhsvtetgaqvfgftlqpgadtvmertllgeilnyyanwsgsikltfmy
cgsamatgkfllaysppgagvpknrreamlgthiiwdiglqsscvlcvpwisqthyrfvs
kdiytdagfitcwyqtsivvpaevqnqsvilcfvsacndfsvrllrdspfvrqtafyq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ilmD (D:)
gaqvstqktgahetslsasgnsiihytninyykdaasnsanrqdftqdpgkftepvkdim
vkslpaln

    Sequence, based on observed residues (ATOM records):
    >6ilmD (D:)
gaqvstqktgahetsiihytninyykdaasnsanrqdftqdpgkftepvkdimvkslpal
n

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6ilmE (E:)
lsllyhltavsspapgtpafwvsgwlgpqqylsynslrgeaepcgawvwenqvswyweke
ttdlrikeklfleafkalggkgpytlqgllgcelgpdntsvptakfalngeefmnfdlkq
gtwggdwpealaisqrwqqqdkaankeltfllfscphrlrehlergrgnlewkeppsmrl
karpsspgfsvltcsafsfyppelqlrflrnglaagtgqgdfgpnsdgsfhasssltvks
gdehhyccivqhaglaqplrvel

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6ilmF (F:)
iqrtpkiqvysrhpaengksnflncyvsgfhpsdievdllkngeriekvehsdlsfskdw
sfyllyyteftptekdeyacrvnhvtlsqpkivkwdrdm