PDB entry 6ilk

View 6ilk on RCSB PDB site
Description: Cryo-EM structure of Echovirus 6 complexed with its attachment receptor CD55 at PH 7.4
Class: virus
Keywords: Echovirus 6, CD55, Cryo-EM, virus-receptor complex, VIRUS
Deposited on 2018-10-18, released 2019-05-15
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILK (0-277)
    Domains in SCOPe 2.08: d6ilka_
  • Chain 'B':
    Compound: capsid protein VP2
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILK (0-251)
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILK (0-237)
    Domains in SCOPe 2.08: d6ilkc_
  • Chain 'D':
    Compound: capsid protein VP4
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILK (0-67)
  • Chain 'E':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD55
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ilke1, d6ilke2, d6ilke3
  • Heterogens: SPH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ilkA (A:)
vvrvadtmpsgpsnsesipaltaaetghtsqvvpsdtiqtrhvrnfhvrsessvenflsr
sacvyiveyktrddtpdkmydswvintrqvaqlrrklefftyvrfdvevtfvitsvqdds
trqntdtpalthqimyvppggpipqavddynwqtstnpsvfwtegnapprmsipfmsvgn
aysnfydgwshfsqtgvygfntlnnmgklyfrhvndktispitskvriyfkpkhvkawvp
rpprlceythkdnvdfepkgvttsrtqltisnsthven

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ilkC (C:)
glpvmntpgsnqfltsddyqsptampqfdvtpemnipgevknlmeiaevdsvvpvnnvne
nvnsleayripvhsvtetgaqvfgftlqpgadtvmertllgeilnyyanwsgsikltfmy
cgsamatgkfllaysppgagvpknrreamlgthiiwdiglqsscvlcvpwisqthyrfvs
kdiytdagfitcwyqtsivvpaevqnqsvilcfvsacndfsvrllrdspfvrqtafyq

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6ilkE (E:)
cnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkwst
avefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqw
sdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnde
gewsgpppecrg