PDB entry 6ilj

View 6ilj on RCSB PDB site
Description: cryo-em structure of echovirus 6 complexed with its attachment receptor cd55 at ph 5.5
Deposited on 2018-10-18, released 2019-05-15
The last revision was dated 2019-11-06, with a file datestamp of 2019-11-01.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILJ (0-277)
  • Chain 'B':
    Compound: capsid protein VP2
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILJ (0-251)
  • Chain 'C':
    Compound: capsid protein vp3
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILJ (0-237)
  • Chain 'D':
    Compound: capsid protein VP4
    Species: Echovirus E6 [TaxId:12062]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ILJ (0-67)
  • Chain 'E':
    Compound: complement decay-accelerating factor
    Species: Homo sapiens [TaxId:9606]
    Gene: CD55, CR, DAF
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SPH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6iljA (A:)
vvrvadtmpsgpsnsesipaltaaetghtsqvvpsdtiqtrhvrnfhvrsessvenflsr
sacvyiveyktrddtpdkmydswvintrqvaqlrrklefftyvrfdvevtfvitsvqdds
trqntdtpalthqimyvppggpipqavddynwqtstnpsvfwtegnapprmsipfmsvgn
aysnfydgwshfsqtgvygfntlnnmgklyfrhvndktispitskvriyfkpkhvkawvp
rpprlceythkdnvdfepkgvttsrtqltisnsthven

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6iljB (B:)
sdrvrsitlgnstittqesanvvvgygvwpdylsdeeataedqptqpdvatcrfytldsv
swmkesqgwwwkfpdalrdmglfgqnmqyhylgrsgytihvqcnaskfhqgcllvvcvpe
aemgaaninekinrehlsngevantfsgtkssntndvqqavfnagmgvavgnltifphqw
inlrtnncativmpyinsvpmdnmfrhynftlmiipfakldyaagsstyipitvtvapmc
aeynglrlaghq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6iljC (C:)
glpvmntpgsnqfltsddyqsptampqfdvtpemnipgevknlmeiaevdsvvpvnnvne
nvnsleayripvhsvtetgaqvfgftlqpgadtvmertllgeilnyyanwsgsikltfmy
cgsamatgkfllaysppgagvpknrreamlgthiiwdiglqsscvlcvpwisqthyrfvs
kdiytdagfitcwyqtsivvpaevqnqsvilcfvsacndfsvrllrdspfvrqtafyq

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iljD (D:)
gaqvstqktgahetslsasgnsiihytninyykdaasnsanrqdftqdpgkftepvkdim
vkslpaln

    Sequence, based on observed residues (ATOM records):
    >6iljD (D:)
gaqvstqktgaheiihytninyykdaasnsanrqdftqdpgkftepvkdimvkslpaln

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6iljE (E:)
cnrscevptrlnsaslkqpyitqnyfpvgtvveyecrpgyrrepslspkltclqnlkwst
avefckkkscpnpgeirngqidvpggilfgatisfscntgyklfgstssfclisgssvqw
sdplpecreiycpappqidngiiqgerdhygyrqsvtyacnkgftmigehsiyctvnnde
gewsgpppecrg