PDB entry 6ikk

View 6ikk on RCSB PDB site
Description: Crystal structure of YfiB(L43P) in complex with YfiR
Class: signaling protein
Keywords: Complex; signalling system; peptidoglycan binding, SIGNALING PROTEIN
Deposited on 2018-10-16, released 2019-03-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-03-13, with a file datestamp of 2019-03-08.
Experiment type: XRAY
Resolution: 2.19 Å
R-factor: N/A
AEROSPACI score: 0.27 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: YfiB
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) [TaxId:208964]
    Gene: yfiB, PA1119
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ikka_
  • Chain 'B':
    Compound: YfiR
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) [TaxId:208964]
    Gene: yfiR, PA1121
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: YfiB
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) [TaxId:208964]
    Gene: yfiB, PA1119
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9I4L6
      • engineered mutation (42)
    Domains in SCOPe 2.08: d6ikkc_
  • Chain 'D':
    Compound: YfiR
    Species: Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1) [TaxId:208964]
    Gene: yfiR, PA1121
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SO4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ikkA (A:)
mlpqrlhpsrllalalfslvlglagcqtkppqtglsaeqiavpqeqgfelrdegwefgms
skvlfgnnldrlnpdsrntltkiarallavdidkvrleghtdnygdegynqklserraes
vaavfreagmpaanievrglgmskpvadnktragrsenrrvaiivpae

    Sequence, based on observed residues (ATOM records): (download) 
    >6ikkA (A:)
qeqgfelrdegwefgmsskvlfgnnldrlnpdsrntltkiarallavdidkvrleghtdn
ygdegynqklserraesvaavfreagmpaanievrglgmskpvadnktragrsenrrvai
ivpa

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ikkC (C:)
mlpqrlhpsrllalalfslvlglagcqtkppqtglsaeqiavpqeqgfelrdegwefgms
skvlfgnnldrlnpdsrntltkiarallavdidkvrleghtdnygdegynqklserraes
vaavfreagmpaanievrglgmskpvadnktragrsenrrvaiivpae

    Sequence, based on observed residues (ATOM records): (download) 
    >6ikkC (C:)
pqeqgfelrdegwefgmsskvlfgnnldrlnpdsrntltkiarallavdidkvrleghtd
nygdegynqklserraesvaavfreagmpaanievrglgmskpvadnktragrsenrrva
iivpa

  • Chain 'D':
    No sequence available.