PDB entry 6ij2

View 6ij2 on RCSB PDB site
Description: crystal structure of a standalone versatile eal protein from vibrio cholerae o395 - 5'-pgpg bound form
Deposited on 2018-10-08, released 2019-10-09
The last revision was dated 2020-01-22, with a file datestamp of 2020-01-17.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: EAL domain protein
    Species: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [TaxId:345073]
    Gene: VC0395_A1247
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: EAL domain protein
    Species: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [TaxId:345073]
    Gene: VC0395_A1247
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: EAL domain protein
    Species: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [TaxId:345073]
    Gene: VC0395_A1247
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: EAL domain protein
    Species: Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395) [TaxId:345073]
    Gene: VC0395_A1247
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: RNA (5'-r(p*gp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'F':
    Compound: RNA (5'-r(p*gp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'G':
    Compound: RNA (5'-r(p*gp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'H':
    Compound: RNA (5'-r(p*gp*g)-3')
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: CA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ij2A (A:)
mhiipvasdpktcssgvnensldfdftmafqpivncrtkeifgyealvrglnnesaysvi
srvnednrylfdqmcrvkaialaaklgltsklsinflpnaiyvpercirttleaakryqf
pienimfefteaervedvnhikriveyykslgfqtaiddfgsgysglnlladfqtnivkv
dmglirnihadqvrqsimknclklfsdlniqplaegveshaefawlkaagvelmqgyyfa
kpgfeslpsvnpefsea

    Sequence, based on observed residues (ATOM records):
    >6ij2A (A:)
ldfdftmafqpivncrtkeifgyealvrglnnesaysvisrvnednrylfdqmcrvkaia
laaklgltsklsinflpnaiyvpercirttleaakryqfpienimfefteaervedvnhi
kriveyykslgfqtaiddfgsgysglnlladfqtnivkvdmglirnihadqvrqsimknc
lklfsdlniqplaegveshaefawlkaagvelmqgyyfakpgfeslpsvnpefsea

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ij2B (B:)
mhiipvasdpktcssgvnensldfdftmafqpivncrtkeifgyealvrglnnesaysvi
srvnednrylfdqmcrvkaialaaklgltsklsinflpnaiyvpercirttleaakryqf
pienimfefteaervedvnhikriveyykslgfqtaiddfgsgysglnlladfqtnivkv
dmglirnihadqvrqsimknclklfsdlniqplaegveshaefawlkaagvelmqgyyfa
kpgfeslpsvnpefsea

    Sequence, based on observed residues (ATOM records):
    >6ij2B (B:)
ldfdftmafqpivncrtkeifgyealvrglnnesaysvisrvnednrylfdqmcrvkaia
laaklgltsklsinflpnaiyvpercirttleaakryqfpienimfefteaervedvnhi
kriveyykslgfqtaiddfgsgysglnlladfqtnivkvdmglirnihadqvrqsimknc
lklfsdlniqplaegveshaefawlkaagvelmqgyyfakpgfeslpsvnpefsea

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ij2C (C:)
mhiipvasdpktcssgvnensldfdftmafqpivncrtkeifgyealvrglnnesaysvi
srvnednrylfdqmcrvkaialaaklgltsklsinflpnaiyvpercirttleaakryqf
pienimfefteaervedvnhikriveyykslgfqtaiddfgsgysglnlladfqtnivkv
dmglirnihadqvrqsimknclklfsdlniqplaegveshaefawlkaagvelmqgyyfa
kpgfeslpsvnpefsea

    Sequence, based on observed residues (ATOM records):
    >6ij2C (C:)
ldfdftmafqpivncrtkeifgyealvrglnnesaysvisrvnednrylfdqmcrvkaia
laaklgltsklsinflpnaiyvpercirttleaakryqfpienimfefteaervedvnhi
kriveyykslgfqtaiddfgsgysglnlladfqtnivkvdmglirnihadqvrqsimknc
lklfsdlniqplaegveshaefawlkaagvelmqgyyfakpgfeslpsvnpefsea

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ij2D (D:)
mhiipvasdpktcssgvnensldfdftmafqpivncrtkeifgyealvrglnnesaysvi
srvnednrylfdqmcrvkaialaaklgltsklsinflpnaiyvpercirttleaakryqf
pienimfefteaervedvnhikriveyykslgfqtaiddfgsgysglnlladfqtnivkv
dmglirnihadqvrqsimknclklfsdlniqplaegveshaefawlkaagvelmqgyyfa
kpgfeslpsvnpefsea

    Sequence, based on observed residues (ATOM records):
    >6ij2D (D:)
ldfdftmafqpivncrtkeifgyealvrglnnesaysvisrvnednrylfdqmcrvkaia
laaklgltsklsinflpnaiyvpercirttleaakryqfpienimfefteaervedvnhi
kriveyykslgfqtaiddfgsgysglnlladfqtnivkvdmglirnihadqvrqsimknc
lklfsdlniqplaegveshaefawlkaagvelmqgyyfakpgfeslpsvnpefsea

  • Chain 'E':
    No sequence available.

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.