PDB entry 6iij

View 6iij on RCSB PDB site
Description: Cryo-EM structure of CV-A10 mature virion
Class: viral protein
Keywords: Coxsackievirus A10, Mature virion, VIRAL PROTEIN
Deposited on 2018-10-06, released 2018-11-07
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-05-22, with a file datestamp of 2019-05-17.
Experiment type: EM
Resolution: 2.84 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6iija_
  • Chain 'B':
    Compound: vp2
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6iijb_
  • Chain 'C':
    Compound: vp3
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6iijc_
  • Chain 'D':
    Compound: vp4
    Species: Coxsackievirus A10 [TaxId:42769]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SPH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6iijA (A:)
gdpvediihdalgntarraisgatnvesaadttpsshrletgrvpalqaaetgatsnatd
enmietrcvinrngvlettinhffsrsglvgvvnltdggdttgyatwdidimgfvqlrrk
cemftymrfnaeftfvtttksgearpymlqymyvppgapkptgrdafqwqtatnpsvfvk
ltdppaqvsvpfmspasayqwfydgyptfgqhpetsnttyglcpnnmmgtfavrvvsrea
sqlklqtrvymklkhvrawvprpirsqpyllknfpnydsskitnsardrssikqanm

    Sequence, based on observed residues (ATOM records): (download) 
    >6iijA (A:)
dpvediihraisgatnvesaadttpsshrletgrvpalqaaetgatsnatdenmietrcv
inrngvlettinhffsrsglvgvvnltdggdttgyatwdidimgfvqlrrkcemftymrf
naeftfvtttksgearpymlqymyvppgapkptgrdafqwqtatnpsvfvkltdppaqvs
vpfmspasayqwfydgyptfgqhpetsnttyglcpnnmmgtfavrvvsreasqlklqtrv
ymklkhvrawvprpirsqpyllknfpnydsskitnsardrssikqan

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6iijB (B:)
spsveacgysdrvaqltvgnssittqeaanivlaygewpeycpdtdatavdkptrpdvsv
nrfytldskmwqenstgwywkfpdvlnktgvfgqnaqfhylyrsgfclhvqcnaskfhqg
allvavipefviagrgsntkpneaphpgftttfpgttgatfhdpyvldsgvplsqaliyp
hqwvnlrtnncatvivpyinavpfdsainhsnfglvvvpvsplkyssgattaipititia
plnsefgglrqavsq

    Sequence, based on observed residues (ATOM records): (download) 
    >6iijB (B:)
sdrvaqltvgnssittqeaanivlaygewpeycpdtdatavdkptrpdvsvnrfytldsk
mwqenstgwywkfpdvlnktgvfgqnaqfhylyrsgfclhvqcnaskfhqgallvavipe
fviagrgsntkpneaphpgftttfpgttgatfhdpyvldsgvplsqaliyphqwvnlrtn
ncatvivpyinavpfdsainhsnfglvvvpvsplkyssgattaipititiaplnsefggl
rqavsq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6iijC (C:)
gipaelrpgtnqflttdddtaapilpgftptptihipgevhsllelcrvetilevnntte
atgltrllipvssqnkadelcaafmvdpgrigpwqstlvgqicryytqwsgslkvtfmft
gsfmatgkmlvaysppgsaqpanretamlgthviwdfglqssvslvipwisnthfrtakt
ggnydyytagvvtlwyqtnyvvppetpgeayiiamgaaqdnftlkickdtdevtqqavlq

  • Chain 'D':
    No sequence available.