PDB entry 6iic

View 6iic on RCSB PDB site
Description: cryoem structure of mud crab dicistrovirus
Deposited on 2018-10-04, released 2019-01-16
The last revision was dated 2019-04-03, with a file datestamp of 2019-03-29.
Experiment type: EM
Resolution: 3.3 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: VP1 of Mud crab dicistrovirus
    Species: Mud crab virus [TaxId:932662]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: VP2 of Mud crab dicistrovirus
    Species: Mud crab virus [TaxId:932662]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: VP3 of Mud crab dicistrovirus
    Species: Mud crab virus [TaxId:932662]
    Database cross-references and differences (RAF-indexed):
    • Uniprot E5G7H9 (0-End)
      • see sequence details (30-33)
  • Chain 'D':
    Compound: VP4 of Mud crab dicistrovirus
    Species: Mud crab virus [TaxId:932662]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6iicA (A:)
gggmdyaksdssslvttmgeqfrslrmltrrssptdvltgtsvtlpgitigtdsslrqsv
lniisymyrftkgsisykiipkikgdlyittssadnielnsnaysfdvnralhyqntaln
pvvqvslpyycpsenlvidstsfpnlsnlvltnlerssntytvlvsagddhtfsqlagcp
aftigpsrsaa

    Sequence, based on observed residues (ATOM records):
    >6iicA (A:)
gmdyaksdssslvttmgeqfrslrmltrrssptdvltgtsvtlpgitigtdsslrqsvln
iisymyrftkgsisykiipkikgdlyittssadnielnsnaysfdvnralhyqntalnpv
vqvslpyycpsenlvidstsfpnlsnlvltnlerssntytvlvsagddhtfsqlagcpaf
tigpsrsa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6iicB (B:)
mdssvtntgglmpsatisnsegatmllndipdptqnvflsrnvtdnlfevqdqnliesls
revllgtgtwqsgqaeisttlteqqlitnyeqpsirqislpddivkgssfiasklaniay
mrcdyelylrvqgspflqgllllwnkmnadqtskirssitehlrsitsfpgvtlnmqsds
rsvklvipytsefqvfnprnenklnsvrlsilsalrgpstsekatysimgrmtniklygh
apsivslsypqte

    Sequence, based on observed residues (ATOM records):
    >6iicB (B:)
svtntgglmpsatisnsegatmllndipdptqnvflsrnvtdnlfevqdqnlieslsrev
llgtgtwqsgqaeisttlteqqlitnyeqpsirqislpddivkgssfiasklaniaymrc
dyelylrvqgspflqgllllwnkmnadqtskirssitehlrsitsfpgvtlnmqsdsrsv
klvipytsefqvfnprnenklnsvrlsilsalrgpstsekatysimgrmtniklyghaps
ivslsypqte

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6iicC (C:)
skdrdlskvspyenipakgfthgvgfdygvplslfpdnaidptianpesidemsiqylas
rpymldrytikggntpspsgtvvadipispvnyslygsiirdyrtifgapvslavamasw
wrakihlnlqfaktqyhqcrllvqylpygsdvqslenvlsqiidishvdesgidlcfpsi
ftnkwmrsydpategytagcapgrilisvlnplisastvnddivmmpwltwenlelaepg
slakaaigfdypadavdekwtsrelpvtgssfnlfrdttivlgastnisnlvltnddtgg
dyqivsttptgsyvsavtcpqgtytithdgvgatiisnfpilgagegpsfqisalrhgdk
vtitedptkinvsgvsfltgtnswkaslkdssgtllgrleydgtsfssdspaslipgkyn
veldpadnsavvtivannsfgtasldth

    Sequence, based on observed residues (ATOM records):
    >6iicC (C:)
skdrdlskvspyenipakgfthgvgfdygvplslfpdnaidptianpesidemsiqylas
rpymldrytikggntpspsgtvvadipispvnyslygsiirdyrtifgapvslavamasw
wrakihlnlqfaktqyhqcrllvqylpygsdvqslenvlsqiidishvdesgidlcfpsi
ftnkwmrsydpategytagcapgrilisvlnplisastvnddivmmpwltwenlelaepg
slakaaigfdypa

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6iicD (D:)
ggddatasqrgivtqvadtvssisnvvdglgvpllssiskpigwvsnvvsnvasifgf

    Sequence, based on observed residues (ATOM records):
    >6iicD (D:)
ddatasqrgivtqvadtvssisnvvdglgvpllssiskpigwvsnvvsnvasifgf