PDB entry 6ii9

View 6ii9 on RCSB PDB site
Description: crystal structure of h7 hemagglutinin from a/anhui/1/2013 in complex with a human neutralizing antibody l3a-44
Deposited on 2018-10-03, released 2018-10-24
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-02.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1386076]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1663875]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1386076]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1663875]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1386076]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Hemagglutinin
    Species: Influenza A virus [TaxId:1663875]
    Gene: HA
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Heavy chain of L3A-44 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6II9 (0-220)
  • Chain 'L':
    Compound: Light chain of L3A-44 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6II9 (0-211)
  • Chain 'M':
    Compound: Heavy chain of L3A-44 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6II9 (0-220)
  • Chain 'N':
    Compound: Light chain of L3A-44 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6II9 (0-211)
  • Chain 'P':
    Compound: Heavy chain of L3A-44 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6II9 (0-220)
  • Chain 'Q':
    Compound: Light chain of L3A-44 Fab
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6II9 (0-211)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6ii9A (A:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpei

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6ii9B (B:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnr

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6ii9C (C:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpei

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6ii9D (D:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ii9E (E:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpei

    Sequence, based on observed residues (ATOM records):
    >6ii9E (E:)
dkiclghhavsngtkvntltergvevvnatetvertnipricskgkrtvdlgqcgllgti
tgppqcdqflefsadliierregsdvcypgkfvneealrqilresggidkeamgftysgi
rtngatsacrrsgssfyaemkwllsntdnaafpqmtksykntrkspalivwgihhsvsta
eqtklygsgnklvtvgssnyqqsfvpspgarpqvnglsgridfhwlmlnpndtvtfsfng
afiapdrasflrgksmgiqsgvqvdancegdcyhsggtiisnlpfqnidsravgkcpryv
kqrslllatgmknvpe

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6ii9F (F:)
glfgaiagfiengweglidgwygfrhqnaqgegtaadykstqsaidqitgklnrliektn
qqfelidnefnevekqignvinwtrdsitevwsynaellvamenqhtidladsemdklye
rvkrqlrenaeedgtgcfeifhkcdddcmasirnntydhskyreeamqnr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ii9H (H:)
lqlqewgagllkpsetlsltcavyggsfsgyywswirqppgkglewigeinhsggtnynp
slksrvtisvdtsnnqfslklssvtaadtavyycargvwegsgsdnfdywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records):
    >6ii9H (H:)
lqlqewgagllkpsetlsltcavyggsfsgyywswirqppgkglewigeinhsggtnynp
slksrvtisvdtsnnqfslklssvtaadtavyycargvwegsgsdnfdywgqgtlvtvss
astkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'L':
    Sequence; same for both SEQRES and ATOM records:
    >6ii9L (L:)
altqppsvsgapgqrvtisctgsssnigagfdvhwyqqlpgtapklliygnsfrpsgvpd
rfsgsksgtsaslaiaglqaedeadyycqsydsslsgvvfgggtkltvlgqpkaapsvtl
fppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassy
lsltpeqwkshrsyscqvthegstvektvapt

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6ii9M (M:)
lqlqewgagllkpsetlsltcavyggsfsgyywswirqppgkglewigeinhsggtnynp
slksrvtisvdtsnnqfslklssvtaadtavyycargvwegsgsdnfdywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records):
    >6ii9M (M:)
lqlqewgagllkpsetlsltcavyggsfsgyywswirqppgkglewigeinhsggtnynp
slksrvtisvdtsnnqfslklssvtaadtavyycargvwegsgsdnfdywgqgtlvtvss
astkgpsvfplaptaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglyslssv
vtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6ii9N (N:)
altqppsvsgapgqrvtisctgsssnigagfdvhwyqqlpgtapklliygnsfrpsgvpd
rfsgsksgtsaslaiaglqaedeadyycqsydsslsgvvfgggtkltvlgqpkaapsvtl
fppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassy
lsltpeqwkshrsyscqvthegstvektvapt

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6ii9P (P:)
lqlqewgagllkpsetlsltcavyggsfsgyywswirqppgkglewigeinhsggtnynp
slksrvtisvdtsnnqfslklssvtaadtavyycargvwegsgsdnfdywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

    Sequence, based on observed residues (ATOM records):
    >6ii9P (P:)
lqlqewgagllkpsetlsltcavyggsfsgyywswirqppgkglewigeinhsggtnynp
slksrvtisvdtsnnqfslklssvtaadtavyycargvwegsgsdnfdywgqgtlvtvss
astkgpsvfplapssgtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqssglysl
ssvvtvpssslgtqtyicnvnhkpsntkvdkkvepk

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6ii9Q (Q:)
altqppsvsgapgqrvtisctgsssnigagfdvhwyqqlpgtapklliygnsfrpsgvpd
rfsgsksgtsaslaiaglqaedeadyycqsydsslsgvvfgggtkltvlgqpkaapsvtl
fppsseelqankatlvclisdfypgavtvawkadsspvkagvetttpskqsnnkyaassy
lsltpeqwkshrsyscqvthegstvektvapt