PDB entry 6ii2

View 6ii2 on RCSB PDB site
Description: crystal structure of alpha-beta hydrolase (abh) and makes caterpillars floppy (mcf)-like effectors of vibrio vulnificus mo6-24/o
Deposited on 2018-10-03, released 2019-08-07
The last revision was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative RTX-toxin
    Species: Vibrio vulnificus [TaxId:672]
    Gene: rtxA1
    Database cross-references and differences (RAF-indexed):
    • PDB 6II2
  • Chain 'B':
    Compound: Putative RTX-toxin
    Species: Vibrio vulnificus [TaxId:672]
    Gene: rtxA1
    Database cross-references and differences (RAF-indexed):
    • PDB 6II2
  • Chain 'C':
    Compound: Putative RTX-toxin
    Species: Vibrio vulnificus [TaxId:672]
    Gene: rtxA1
    Database cross-references and differences (RAF-indexed):
    • PDB 6II2
  • Chain 'D':
    Compound: Putative RTX-toxin
    Species: Vibrio vulnificus [TaxId:672]
    Gene: rtxA1
    Database cross-references and differences (RAF-indexed):
    • PDB 6II2

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ii2A (A:)
    msgnekhkenvaiendgtpprdkeslspltrflnnelygekdarrkigeitqtlldhave
    ngesqkvtlkgevgrltgyyhqgaassegetsatsgkvvlflhgsgssaeeqaseirnhy
    qkqgidmlavnlrgygesdggpsekglyqdartmfnylvndkgidpsniiihgysmggpi
    aadlaryaaqngqavsgllldrpmpsmtkaitahevanpagivgaiakavngqfsveknl
    kglpketpillltdneglgeegeklraklaiagynvtgeqtfygheasnrlmgqyadqiv
    sglfnaeqaaveagevlkglekdfkrygdalkpdtsvpgkskdirttkdflngykndhak
    eivdgfrsdmsikqlvdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreia
    sagvvdakateqlapqlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekm
    ysaaavlsnptlysdsenanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngv
    vekitdasangkpvlleldapghamaawakgsgddrvygfydpnagivefssaekfgdyl
    trffgksdlnmaqsyklgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvf
    datpmkkpgtsdvdgnakavddtkealehhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6ii2A (A:)
    envaiendgtpprdkeslspltrflnnelygekdarrkigeitqtlldhavesqkvtlkg
    evgrltgyyhqgaassgkvvlflhgsgssaeeqaseirnhyqkqgidmlavnlrgygesd
    ggpsekglyqdartmfnylvndkgidpsniiihgysmggpiaadlaryaaqngqavsgll
    ldrpmpsmtkaitahevanpagivgaiakavngqfsveknlkglpketpillltdneglg
    eegeklraklaiagynvtgeqtfygheasnrlmgqyadqivsglfnaeqaaveagevlkg
    lekdfkirttkdflngykndhakeivdgfrsdmsikqlvdlfvkgswsaeqkgalaweie
    sralkvtfqnksekynrlfreiasagvvdakateqlapqlmlsdplsklvlvakqlendg
    qvgvarqllekmysaaavlsnptlysdsenanaskllsslaaihaknpmhdtsmkvwqek
    legkqaltvngvvekitdasangkpvlleldapghamaawakgsgddrvygfydpnagiv
    efssaekfgdyltrffgksdlnmaqsyklgkndageaifnrvvvmdgntlasykptfgdk
    ttmqgildlpvfda
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ii2B (B:)
    msgnekhkenvaiendgtpprdkeslspltrflnnelygekdarrkigeitqtlldhave
    ngesqkvtlkgevgrltgyyhqgaassegetsatsgkvvlflhgsgssaeeqaseirnhy
    qkqgidmlavnlrgygesdggpsekglyqdartmfnylvndkgidpsniiihgysmggpi
    aadlaryaaqngqavsgllldrpmpsmtkaitahevanpagivgaiakavngqfsveknl
    kglpketpillltdneglgeegeklraklaiagynvtgeqtfygheasnrlmgqyadqiv
    sglfnaeqaaveagevlkglekdfkrygdalkpdtsvpgkskdirttkdflngykndhak
    eivdgfrsdmsikqlvdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreia
    sagvvdakateqlapqlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekm
    ysaaavlsnptlysdsenanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngv
    vekitdasangkpvlleldapghamaawakgsgddrvygfydpnagivefssaekfgdyl
    trffgksdlnmaqsyklgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvf
    datpmkkpgtsdvdgnakavddtkealehhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6ii2B (B:)
    envaiendgtpprdkeslspltrflnnelygekdarrkigeitqtlldhavsqkvtlkge
    vgrltgyyhqgaasssgkvvlflhgsgssaeeqaseirnhyqkqgidmlavnlrgygesd
    ggpsekglyqdartmfnylvndkgidpsniiihgysmggpiaadlaryaaqngqavsgll
    ldrpmpsmtkaitahegivgaiakavngqfsveknlkglpketpillltdneglgeegek
    lraklaiagynvtgeqtfygheasnrlmgqyadqivsglfnaeqaaveagevlkglekdf
    krdirttkdflngykndhakeivdgfrsdmsikqlvdlfvkgswsaeqkgalaweiesra
    lkvtfqnksekynrlfreiasagvvdakateqlapqlmllsdplsklvlvakqlendgqv
    gvarqllekmysaaavlsnptlysdsenanaskllsslaaihaknpmhdtsmkvwqekle
    gkqaltvngvvekitdasangkpvlleldapghamaawakgsgddrvygfydpnagivef
    ssaekfgdyltrffgksdlnmaqsyklgkndageaifnrvvvmdgntlasykptfgdktt
    mqgildlpvfda
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ii2C (C:)
    msgnekhkenvaiendgtpprdkeslspltrflnnelygekdarrkigeitqtlldhave
    ngesqkvtlkgevgrltgyyhqgaassegetsatsgkvvlflhgsgssaeeqaseirnhy
    qkqgidmlavnlrgygesdggpsekglyqdartmfnylvndkgidpsniiihgysmggpi
    aadlaryaaqngqavsgllldrpmpsmtkaitahevanpagivgaiakavngqfsveknl
    kglpketpillltdneglgeegeklraklaiagynvtgeqtfygheasnrlmgqyadqiv
    sglfnaeqaaveagevlkglekdfkrygdalkpdtsvpgkskdirttkdflngykndhak
    eivdgfrsdmsikqlvdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreia
    sagvvdakateqlapqlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekm
    ysaaavlsnptlysdsenanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngv
    vekitdasangkpvlleldapghamaawakgsgddrvygfydpnagivefssaekfgdyl
    trffgksdlnmaqsyklgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvf
    datpmkkpgtsdvdgnakavddtkealehhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6ii2C (C:)
    nvaiendgtpprdkeslspltrflnnelygekdarrkigeitqtlldhavqkvtlkgevg
    rltgyyhqgaassgkvvlflhgsgssaeeqaseirnhyqkqgidmlavnlrgygesdggp
    sekglyqdartmfnylvndkgidpsniiihgysmggpiaadlaryaaqngqavsgllldr
    pmpsmtkaitahevanpagivgaiakavngqfsveknlkglpketpillltdneglgeeg
    eklraklaiagynvtgeqtfygheasnrlmgqyadqivsglfnaeqaaveagevlkglek
    kdflngykndhakeivsikqlvdlfsaeqkgalaweiesralkvtfqnksekynrlfrei
    aakateqlapqlsdplsklvlvakqlendgqvgvarqllekmysaaavlsnptlysdsen
    anaskllsslaaihaknpvwqeklegkqaltvngvvekitdkpvlleldapghamaawak
    gsgddrvygfydpnagivefssaekfgdyltrffgksdlnmaqsyklgkeaifnrvvvmd
    gntlasykptfgdkttmqgildlpvfda
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ii2D (D:)
    msgnekhkenvaiendgtpprdkeslspltrflnnelygekdarrkigeitqtlldhave
    ngesqkvtlkgevgrltgyyhqgaassegetsatsgkvvlflhgsgssaeeqaseirnhy
    qkqgidmlavnlrgygesdggpsekglyqdartmfnylvndkgidpsniiihgysmggpi
    aadlaryaaqngqavsgllldrpmpsmtkaitahevanpagivgaiakavngqfsveknl
    kglpketpillltdneglgeegeklraklaiagynvtgeqtfygheasnrlmgqyadqiv
    sglfnaeqaaveagevlkglekdfkrygdalkpdtsvpgkskdirttkdflngykndhak
    eivdgfrsdmsikqlvdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreia
    sagvvdakateqlapqlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekm
    ysaaavlsnptlysdsenanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngv
    vekitdasangkpvlleldapghamaawakgsgddrvygfydpnagivefssaekfgdyl
    trffgksdlnmaqsyklgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvf
    datpmkkpgtsdvdgnakavddtkealehhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6ii2D (D:)
    envaiendgtpprdkeslspltrflnnelygekdarrkigeitqtlldhavsqkvtlkge
    vgrltgyyhqgasgkvvlflhgsgssaeeqaseirnhyqkqgidmlavnlrgygesdggp
    sekglyqdartmfnylvndkgidpsniiihgysmggpiaadlaryaaqngqavsgllldr
    pmpsmtkaitahevanpagivgaiakavngqfsveknlkglpketpillltdneglgeeg
    eklraklaiagynvtgeqtfygheasnrlmgqyadqivsglfnaeqaaveagevlkglek
    dfkryirttkdflngykndhakeivdgfrsdmsikqlvdlfvkgswsaeqkgalaweies
    ralkvtfqnksekynrlfreiasagvvdakateqlapqlmsdplsklvlvakqlengvar
    qllekmysaaavlsysdsenanaskllsslaaihaknpvngvvekkpvlleldapghama
    awadrvygfydpnagivefssaekfgdyltrffgnrvvvmdgntlasykmqgildlpvf