PDB entry 6ii0

View 6ii0 on RCSB PDB site
Description: crystal structure of the makes caterpillars floppy (mcf)-like effector of vibrio vulnificus mo6-24/o
Deposited on 2018-10-03, released 2019-08-07
The last revision was dated 2020-02-19, with a file datestamp of 2020-02-14.
Experiment type: XRAY
Resolution: 2.36 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative RTX-toxin
    Species: Vibrio vulnificus [TaxId:672]
    Gene: rtxA1
    Database cross-references and differences (RAF-indexed):
    • PDB 6II0
  • Chain 'B':
    Compound: Putative RTX-toxin
    Species: Vibrio vulnificus [TaxId:672]
    Gene: rtxA1
    Database cross-references and differences (RAF-indexed):
    • PDB 6II0
  • Chain 'C':
    Compound: Putative RTX-toxin
    Species: Vibrio vulnificus [TaxId:672]
    Gene: rtxA1
    Database cross-references and differences (RAF-indexed):
    • PDB 6II0
  • Chain 'D':
    Compound: Putative RTX-toxin
    Species: Vibrio vulnificus [TaxId:672]
    Gene: rtxA1
    Database cross-references and differences (RAF-indexed):
    • PDB 6II0
  • Heterogens: GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ii0A (A:)
gamglekdfkrygdalkpdtsvpgkskdirttkdflngykndhakeivdgfrsdmsikql
vdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreiasagvvdakateqlap
qlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekmysaaavlsnptlysd
senanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngvvekitdasangkpvl
leldapghamaawakgsgddrvygfydpnagivefssaekfgdyltrffgksdlnmaqsy
klgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvfdatpmkkpgtsdvdg
nakavddtkea

    Sequence, based on observed residues (ATOM records):
    >6ii0A (A:)
ekdfkrygdaltkdflngykndhakeivdgfrsdmsikqlvdlfvkgswsaeqkgalawe
iesralkvtfqnksekynrlfreiasagvvdakateqlapqlmllnlsndgfggrsdpls
klvlvakqlendgqvgvarqllekmysaaavlsnptlysdsenanaskllsslaaihakn
pmhdtsmkvwqeklegkqaltvngvvekitdasangkpvlleldapghamaawakgsgdd
rvygfydpnagivefssaekfgdyltrffgksdlnmaqsyklgkndageaifnrvvvmdg
ntlasykptfgdkttmqgildlpvfdat

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ii0B (B:)
gamglekdfkrygdalkpdtsvpgkskdirttkdflngykndhakeivdgfrsdmsikql
vdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreiasagvvdakateqlap
qlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekmysaaavlsnptlysd
senanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngvvekitdasangkpvl
leldapghamaawakgsgddrvygfydpnagivefssaekfgdyltrffgksdlnmaqsy
klgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvfdatpmkkpgtsdvdg
nakavddtkea

    Sequence, based on observed residues (ATOM records):
    >6ii0B (B:)
dfkrygdalrttkdflngykndhakeivdgfrsdmsikqlvdlfvkgswsaeqkgalawe
iesralkvtfqnksekynrlfreiasagvvdakateqlapqlmllnlsndgfggrsdpls
klvlvakqlendgqvgvarqllekmysaaavlsnptlysdsenanaskllsslaaihakn
pmhdtsmkvwqeklegkqaltvngvvekitdasangkpvlleldapghamaawakgsgdd
rvygfydpnagivefssaekfgdyltrffgksdlnmaqsyklgkndageaifnrvvvmdg
ntlasykptfgdkttmqgildlpvfdatp

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ii0C (C:)
gamglekdfkrygdalkpdtsvpgkskdirttkdflngykndhakeivdgfrsdmsikql
vdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreiasagvvdakateqlap
qlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekmysaaavlsnptlysd
senanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngvvekitdasangkpvl
leldapghamaawakgsgddrvygfydpnagivefssaekfgdyltrffgksdlnmaqsy
klgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvfdatpmkkpgtsdvdg
nakavddtkea

    Sequence, based on observed residues (ATOM records):
    >6ii0C (C:)
sdmsikqlvdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreiasagvvda
kateqlapqlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekmysaaavl
snptlysdsenanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngvvekitda
sangkpvlleldapghamaawakgsgddrvygfydpnagivefssaekfgdyltrffgks
dlnmaqsyklgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvfdat

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ii0D (D:)
gamglekdfkrygdalkpdtsvpgkskdirttkdflngykndhakeivdgfrsdmsikql
vdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreiasagvvdakateqlap
qlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekmysaaavlsnptlysd
senanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngvvekitdasangkpvl
leldapghamaawakgsgddrvygfydpnagivefssaekfgdyltrffgksdlnmaqsy
klgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvfdatpmkkpgtsdvdg
nakavddtkea

    Sequence, based on observed residues (ATOM records):
    >6ii0D (D:)
sdmsikqlvdlfvkgswsaeqkgalaweiesralkvtfqnksekynrlfreiasagvvda
kateqlapqlmllnlsndgfggrsdplsklvlvakqlendgqvgvarqllekmysaaavl
snptlysdsenanaskllsslaaihaknpmhdtsmkvwqeklegkqaltvngvvekitda
sangkpvlleldapghamaawakgsgddrvygfydpnagivefssaekfgdyltrffgks
dlnmaqsyklgkndageaifnrvvvmdgntlasykptfgdkttmqgildlpvfdat