PDB entry 6igq

View 6igq on RCSB PDB site
Description: crystal structure of inactive state of s9 peptidase from deinococcus radiodurans r1 (pmsf treated)
Deposited on 2018-09-25, released 2018-11-14
The last revision was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acyl-peptide hydrolase, putative
    Species: Deinococcus radiodurans str. R1 [TaxId:243230]
    Gene: DR_0165
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Acyl-peptide hydrolase, putative
    Species: Deinococcus radiodurans str. R1 [TaxId:243230]
    Gene: DR_0165
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Acyl-peptide hydrolase, putative
    Species: Deinococcus radiodurans str. R1 [TaxId:243230]
    Gene: DR_0165
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Acyl-peptide hydrolase, putative
    Species: Deinococcus radiodurans str. R1 [TaxId:243230]
    Gene: DR_0165
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, SO4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6igqA (A:)
gsnnsetpapgpdsllalafpsdpqvspdgkqvafvlaqiseedpakpdkdfarpryrsg
lwlseggaarplthaetgrgdsaprwspdgqnlafvrsagevkaalmllplkggearrvt
hfkngvsgpqwspdgrfiaftttadtedkrdergearvltrpvyrangadwlperpaalw
lydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplptadap
aapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhp
vgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisa
ftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvll
pegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiyg
rwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrci
snlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhr
cpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

    Sequence, based on observed residues (ATOM records):
    >6igqA (A:)
tpapgpdsllalafpsdpqvspdgkqvafvlaqipryrsglwlseggaarplthaetgrg
dsaprwspdgqnlafvrsavkaalmllplkggearrvthfkngvsgpqwspdgrfiaftt
tadpaalwlydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydl
plptapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtgh
dhpvgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgv
isaftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegw
vllpegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvda
iygrwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitd
rcisnlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvl
dhrcpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6igqB (B:)
gsnnsetpapgpdsllalafpsdpqvspdgkqvafvlaqiseedpakpdkdfarpryrsg
lwlseggaarplthaetgrgdsaprwspdgqnlafvrsagevkaalmllplkggearrvt
hfkngvsgpqwspdgrfiaftttadtedkrdergearvltrpvyrangadwlperpaalw
lydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplptadap
aapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhp
vgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisa
ftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvll
pegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiyg
rwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrci
snlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhr
cpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

    Sequence, based on observed residues (ATOM records):
    >6igqB (B:)
papgpdsllalafpsdpqvspdgkqvafvlaqipryrsglwlseggaarplthaetgrgd
saprwspdgqnlafvrsvkaalmllplkggearrvthfkngvsgpqwspdgrfiaftttp
aalwlydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplpt
apqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhpv
gdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisaf
tanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvllp
egeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiygr
wgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrcis
nlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhrc
pveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6igqC (C:)
gsnnsetpapgpdsllalafpsdpqvspdgkqvafvlaqiseedpakpdkdfarpryrsg
lwlseggaarplthaetgrgdsaprwspdgqnlafvrsagevkaalmllplkggearrvt
hfkngvsgpqwspdgrfiaftttadtedkrdergearvltrpvyrangadwlperpaalw
lydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplptadap
aapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhp
vgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisa
ftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvll
pegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiyg
rwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrci
snlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhr
cpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

    Sequence, based on observed residues (ATOM records):
    >6igqC (C:)
papgpdsllalafpsdpqvspdgkqvafvlaqipryrsglwlseggaarplthaetgrgd
saprwspdgqnlafvrskaalmllplkggearrvthgvsgpqwspdgrfiafttaalwly
dveadklrewyapeigigalswwpdsrgvlivqsasqwrqdvydlplptpqklldwnsaa
hglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhpvgdavggdchvga
fpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisaftanehgvalire
satrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvllpegeqkvpallni
hggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiygrwgtvdaddllnf
fdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrcisnlisfggtsdig
lrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhrcpveqaeqwyaal
hkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6igqD (D:)
gsnnsetpapgpdsllalafpsdpqvspdgkqvafvlaqiseedpakpdkdfarpryrsg
lwlseggaarplthaetgrgdsaprwspdgqnlafvrsagevkaalmllplkggearrvt
hfkngvsgpqwspdgrfiaftttadtedkrdergearvltrpvyrangadwlperpaalw
lydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplptadap
aapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhp
vgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisa
ftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvll
pegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiyg
rwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrci
snlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhr
cpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

    Sequence, based on observed residues (ATOM records):
    >6igqD (D:)
papgpdsllalafpsdpqvspdgkqvafvlaqipryrsglwlseggaarplthaetgrgd
saprwspdgqnlafvrskaalmllplkggearrvtgvsgpqwspdgrfiafttaalwlyd
veadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplppqklldwn
saahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhpvgdavggdch
vgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisaftanehgval
iresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvllpegeqkvpal
lnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiygrwgtvdaddl
lnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrcisnlisfggts
diglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhrcpveqaeqwy
aalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl