PDB entry 6igp

View 6igp on RCSB PDB site
Description: crystal structure of s9 peptidase (inactive state)from deinococcus radiodurans r1 in p212121
Deposited on 2018-09-25, released 2018-11-14
The last revision was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Acyl-peptide hydrolase, putative
    Species: Deinococcus radiodurans str. R1 [TaxId:243230]
    Gene: DR_0165
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Acyl-peptide hydrolase, putative
    Species: Deinococcus radiodurans str. R1 [TaxId:243230]
    Gene: DR_0165
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Acyl-peptide hydrolase, putative
    Species: Deinococcus radiodurans str. R1 [TaxId:243230]
    Gene: DR_0165
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Acyl-peptide hydrolase, putative
    Species: Deinococcus radiodurans str. R1 [TaxId:243230]
    Gene: DR_0165
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GOL, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6igpA (A:)
gsnnsetpapgpdsllalafpsdpqvspdgkqvafvlaqiseedpakpdkdfarpryrsg
lwlseggaarplthaetgrgdsaprwspdgqnlafvrsagevkaalmllplkggearrvt
hfkngvsgpqwspdgrfiaftttadtedkrdergearvltrpvyrangadwlperpaalw
lydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplptadap
aapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhp
vgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisa
ftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvll
pegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiyg
rwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrci
snlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhr
cpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

    Sequence, based on observed residues (ATOM records):
    >6igpA (A:)
pgpdsllalafpsdpqvspdgkqvafvlaqipryrsglwlseggaarplthaetgrgdsa
prwspdgqnlafvrsavkaalmllplkggearrvthfkngvsgpqwspdgrfiaftttpa
alwlydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplpta
pqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhpvg
davggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisaft
anehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvllpe
geqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiygrw
gtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrcisn
lisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhrcp
veqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6igpB (B:)
gsnnsetpapgpdsllalafpsdpqvspdgkqvafvlaqiseedpakpdkdfarpryrsg
lwlseggaarplthaetgrgdsaprwspdgqnlafvrsagevkaalmllplkggearrvt
hfkngvsgpqwspdgrfiaftttadtedkrdergearvltrpvyrangadwlperpaalw
lydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplptadap
aapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhp
vgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisa
ftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvll
pegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiyg
rwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrci
snlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhr
cpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

    Sequence, based on observed residues (ATOM records):
    >6igpB (B:)
papgpdsllalafpsdpqvspdgkqvafvlaqipryrsglwlseggaarplthaetgrgd
saprwspdgqnlafvrsakaalmllplkggearrvthfkngvsgpqwspdgrfiaftttp
aalwlydveadklrewyapeigigalswwpdsrgvlivqswrqdvydlplptapqklldw
nsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhpvgdavggdc
hvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisaftanehgva
liresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvllpegeqkvpa
llnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiygrwgtvdadd
llnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrcisnlisfggt
sdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhrcpveqaeqw
yaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6igpC (C:)
gsnnsetpapgpdsllalafpsdpqvspdgkqvafvlaqiseedpakpdkdfarpryrsg
lwlseggaarplthaetgrgdsaprwspdgqnlafvrsagevkaalmllplkggearrvt
hfkngvsgpqwspdgrfiaftttadtedkrdergearvltrpvyrangadwlperpaalw
lydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplptadap
aapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhp
vgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisa
ftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvll
pegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiyg
rwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrci
snlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhr
cpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

    Sequence, based on observed residues (ATOM records):
    >6igpC (C:)
papgpdsllalafpsdpqvspdgkqvafvlaqirpryrsglwlseggaarplthaetgrg
dsaprwspdgqnlafvrsaalmllplkggearrvtngvsgpqwspdgrfiafttaalwly
dveadklrewyapeigigalswwpdsrgvlivqsqwrqdvydlplptapqklldwnsaah
glaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhpvgdavggdchvgaf
pegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisaftanehgvalires
atrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvllpegeqkvpallnih
ggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiygrwgtvdaddllnff
drcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrcisnlisfggtsdigl
rfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhrcpveqaeqwyaalh
khqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6igpD (D:)
gsnnsetpapgpdsllalafpsdpqvspdgkqvafvlaqiseedpakpdkdfarpryrsg
lwlseggaarplthaetgrgdsaprwspdgqnlafvrsagevkaalmllplkggearrvt
hfkngvsgpqwspdgrfiaftttadtedkrdergearvltrpvyrangadwlperpaalw
lydveadklrewyapeigigalswwpdsrgvlivqsedewqasqwrqdvydlplptadap
aapqklldwnsaahglaphpdgqrfaligrpagkgntehahlyliengqhrrldtghdhp
vgdavggdchvgafpegprwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisa
ftanehgvaliresatrfpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvll
pegeqkvpallnihggphtdyghgfthefqlmaargygvcysnprgsvgygqawvdaiyg
rwgtvdaddllnffdrcleavprldaaktavmggsyggfmtnwitghttrfqaaitdrci
snlisfggtsdiglrfwddelgldfsrradalklwdlsplqyvenvktptlivhsvldhr
cpveqaeqwyaalhkhqvpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl

    Sequence, based on observed residues (ATOM records):
    >6igpD (D:)
papgpdsllalafpsdpqvspdgkqvafvlaqipryrsglwlseggaarplthaetgrgd
saprwspdgqnlafvrsaalmllplkggearrvthfsgpqwspdgrfiafttaalwlydv
eadklrewyapeigigalswwpdsrgvlivqsqwrqdvydlplptpqklldwnsaahgla
phpdgqrfaligrpagkgntehahlyliengqhrrldtghdhpvgdavggdchvgafpeg
prwldgdtllfsstvrgsvglftahigggvkaydhdpqgvisaftanehgvaliresatr
fpevelngqrvtdlharfpfpvrepqrvtfetelgegegwvllpegeqkvpallnihggp
htdyghgfthefqlmaargygvcysnprgsvgygqawvdaiygrwgtvdaddllnffdrc
leavprldaaktavmggsyggfmtnwitghttrfqaaitdrcisnlisfggtsdiglrfw
ddelgldfsrradalklwdlsplqyvenvktptlivhsvldhrcpveqaeqwyaalhkhq
vpvrfvrfpeenhelsrsgrpdrrltrlneyfawlerwl