PDB entry 6igm

View 6igm on RCSB PDB site
Description: cryo-em structure of human srcap complex
Deposited on 2018-09-25, released 2019-07-24
The last revision was dated 2019-07-24, with a file datestamp of 2019-07-19.
Experiment type: EM
Resolution: 4 Å
R-factor: N/A
AEROSPACI score: 0.07 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ruvb-like 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL1, INO80H, NMP238, TIP49, TIP49A
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: RuvB-like 2
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL2, INO80J, TIP48, TIP49B, CGI-46
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: ruvb-like 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL1, INO80H, NMP238, TIP49, TIP49A
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: RuvB-like 2
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL2, INO80J, TIP48, TIP49B, CGI-46
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ruvb-like 1
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL1, INO80H, NMP238, TIP49, TIP49A
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: RuvB-like 2
    Species: Homo sapiens [TaxId:9606]
    Gene: RUVBL2, INO80J, TIP48, TIP49B, CGI-46
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Actin-related protein 6
    Species: Homo sapiens [TaxId:9606]
    Gene: ACTR6, CDA12
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Helicase SRCAP
    Species: Homo sapiens [TaxId:9606]
    Gene: SRCAP, KIAA0309
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: unknown subunit
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IGM (0-61)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6igmA (A:)
    mkieevksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskk
    magravllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrrai
    glriketkevyegevteltpcetenpmggygktishviiglktakgtkqlkldpsifesl
    qkerveagdviyieansgavkrqgrcdtyatefdleaeeyvplpkgdvhkkkeiiqdvtl
    hdldvanarpqggqdilsmmgqlmkpkkteitdklrgeinkvvnkyidqgiaelvpgvlf
    vdevhmldiecftylhralessiapivifasnrgncvirgteditsphgipldlldrvmi
    irtmlytpqemkqiikiraqteginiseealnhlgeigtkttlrysvqlltpanllakin
    gkdsiekehveeiselfydakssakiladqqdkymk
    

    Sequence, based on observed residues (ATOM records):
    >6igmA (A:)
    qriashshvkglgldesglakqaasglvgqenareacgvivelikskkmagravllagpp
    gtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrraiglriketkevye
    gevteltpceishviiglktakgtkqlkldpsifeslqkerveagdviyieansgavkrq
    grcdtyatefdleaeeyvplpkgdvhkkkeiiqdvtlhdldvanarpteitdklrgeink
    vvnkyidqgiaelvpgvlfvdevhmldiecftylhralessiapivifasnrgncvirgt
    editsphgipldlldrvmiirtmlytpqemkqiikiraqteginiseealnhlgeigtkt
    tlrysvqlltpanllakingkdsiekehveeiselfydakssaki
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6igmB (B:)
    matvtattkvpeirdvtrierigahshirglglddaleprqasqgmvgqlaarraagvvl
    emiregkiagravliagqpgtgktaiamgmaqalgpdtpftaiagseifslemsktealt
    qafrrsigvrikeeteiiegevveiqidrpatgtgskvgkltlkttemetiydlgtkmie
    sltkdkvqagdvitidkatgkisklgrsftrardydamgsqtkfvqcpdgelqkrkevvh
    tvslheidvinsrtqgflalfsgdtgeiksevreqinakvaewreegkaeiipgvlfide
    vhmldiesfsflnralesdmapvlimatnrgitrirgtsyqsphgipidlldrllivstt
    pysekdtkqilrirceeedvemsedaytvltrigletslryaiqlitaaslvcrkrkgte
    vqvddikrvyslfldesrstqymkeyqdaflfnelkgetmdts
    

    Sequence, based on observed residues (ATOM records):
    >6igmB (B:)
    vtrierigahshirglglddaleprqasqgmvgqlaarraagvvlemiregkiagravli
    agqpgtgktaiamgmaqalgpdtpftaiagseifslemsktealtqafrrsigvrikeet
    eiiegevveiqidrpkvgkltlkttemetiydlgtkmiesltdvitidkatgkiqcpdge
    lqkrkevvhtvslheidvinsrtqgflalfsgdtgeiksevreqinakvaewreegkaei
    ipgvlfidevhmldiesfsflnralesdmapvlimatnrgitrirgtsyqsphgipidll
    drllivsttpysekdtkqilrirceeedvemsedaytvltrigletslryaiqlitaasl
    vcrkrkgtevqvddikrvyslfldesrstqymkeyqda
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6igmC (C:)
    mkieevksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskk
    magravllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrrai
    glriketkevyegevteltpcetenpmggygktishviiglktakgtkqlkldpsifesl
    qkerveagdviyieansgavkrqgrcdtyatefdleaeeyvplpkgdvhkkkeiiqdvtl
    hdldvanarpqggqdilsmmgqlmkpkkteitdklrgeinkvvnkyidqgiaelvpgvlf
    vdevhmldiecftylhralessiapivifasnrgncvirgteditsphgipldlldrvmi
    irtmlytpqemkqiikiraqteginiseealnhlgeigtkttlrysvqlltpanllakin
    gkdsiekehveeiselfydakssakiladqqdkymk
    

    Sequence, based on observed residues (ATOM records):
    >6igmC (C:)
    tqriashshvkglgldesglakqaasglvgqenareacgvivelikskkmagravllagp
    pgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrraiglriketkevy
    egevtviiglktakgtkqlkldpsifedviyieavkrqgrcdtpkgdvhkkkeiiqdvtl
    hdldvanarpqkteitdklrgeinkvvnkyidqgiaelvpgvlfvdevhmldiecftylh
    ralessiapivifasnrgncvirgteditsphgipldlldrvmiirtmlytpqemkqiik
    iraqteginiseealnhlgeigtkttlrysvqlltpanllakingkdsiekehveeisel
    fydakssaki
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6igmD (D:)
    matvtattkvpeirdvtrierigahshirglglddaleprqasqgmvgqlaarraagvvl
    emiregkiagravliagqpgtgktaiamgmaqalgpdtpftaiagseifslemsktealt
    qafrrsigvrikeeteiiegevveiqidrpatgtgskvgkltlkttemetiydlgtkmie
    sltkdkvqagdvitidkatgkisklgrsftrardydamgsqtkfvqcpdgelqkrkevvh
    tvslheidvinsrtqgflalfsgdtgeiksevreqinakvaewreegkaeiipgvlfide
    vhmldiesfsflnralesdmapvlimatnrgitrirgtsyqsphgipidlldrllivstt
    pysekdtkqilrirceeedvemsedaytvltrigletslryaiqlitaaslvcrkrkgte
    vqvddikrvyslfldesrstqymkeyqdaflfnelkgetmdts
    

    Sequence, based on observed residues (ATOM records):
    >6igmD (D:)
    rierigahshirglglddaleprqasqgmvgqlaarraagvvlemiregkiagravliag
    qpgtgktaiamgmaqalgpdtpftaiagseifslemsktealtqafrrsigvrikeetei
    iegevveiqgkltlkttemetiydlgtkmiesltkdkvqagdvitidkatgkisklgrsf
    tlqkrkevvhtvslheidvinsrtqgflalftgeiksevreqinakvaewreegkaeiip
    gvlfidevhmldiesfsflnralesdmapvlimatnrgitrirgtsyqsphgipidlldr
    llivsttpysekdtkqilrirceeedvemsedaytvltrigletslryaiqlitaaslvc
    rkrkgtevqvddikrvyslfldesrstqymkeyqda
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6igmE (E:)
    mkieevksttktqriashshvkglgldesglakqaasglvgqenareacgvivelikskk
    magravllagppgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrrai
    glriketkevyegevteltpcetenpmggygktishviiglktakgtkqlkldpsifesl
    qkerveagdviyieansgavkrqgrcdtyatefdleaeeyvplpkgdvhkkkeiiqdvtl
    hdldvanarpqggqdilsmmgqlmkpkkteitdklrgeinkvvnkyidqgiaelvpgvlf
    vdevhmldiecftylhralessiapivifasnrgncvirgteditsphgipldlldrvmi
    irtmlytpqemkqiikiraqteginiseealnhlgeigtkttlrysvqlltpanllakin
    gkdsiekehveeiselfydakssakiladqqdkymk
    

    Sequence, based on observed residues (ATOM records):
    >6igmE (E:)
    tqriashshvkglgldesglakqaasglvgqenareacgvivelikskkmagravllagp
    pgtgktalalaiaqelgskvpfcpmvgsevysteikktevlmenfrraiglriketkevy
    egevteltptishviiglktakgtkqlkldpsifeslqkerveagdviyieeyvplpkgd
    vhkkkeiiqdvtlhdldvanarpqkteitdklrgeinkvvnkyidqgiaelvpgvlfvde
    vhmldiecftylhralessiapivifasnrgncvirgteditsphgipldlldrvmiirt
    mlytpqemkqiikiraqteginiseealnhlgeigtkttlrysvqlltpanllakingkd
    siekehveeiselfydakss
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6igmF (F:)
    matvtattkvpeirdvtrierigahshirglglddaleprqasqgmvgqlaarraagvvl
    emiregkiagravliagqpgtgktaiamgmaqalgpdtpftaiagseifslemsktealt
    qafrrsigvrikeeteiiegevveiqidrpatgtgskvgkltlkttemetiydlgtkmie
    sltkdkvqagdvitidkatgkisklgrsftrardydamgsqtkfvqcpdgelqkrkevvh
    tvslheidvinsrtqgflalfsgdtgeiksevreqinakvaewreegkaeiipgvlfide
    vhmldiesfsflnralesdmapvlimatnrgitrirgtsyqsphgipidlldrllivstt
    pysekdtkqilrirceeedvemsedaytvltrigletslryaiqlitaaslvcrkrkgte
    vqvddikrvyslfldesrstqymkeyqdaflfnelkgetmdts
    

    Sequence, based on observed residues (ATOM records):
    >6igmF (F:)
    trierigahshirglglddaleprqasqgmvgqlaarraagvvlemiregkiagravlia
    gqpgtgktaiamgmaqaltpftaiagseifslemsktealtqafrrsigvrikeeteiie
    gevveiqgkltlkttemetiyagdvitidklqkrkevvhtvslheidvinsrtqgflalf
    sgdtgeiksevreqinakvaewreegkaeiipgvlfidevhmldiesfsflnralesdma
    pvlimatnrgitrirgtsyqsphgipidlldrllivsttpysekdtkqilrirceeedve
    msedaytvltrigletslryaiqlitaaslvcrkrkgtevqvddikrvyslfldesrstq
    ymkeyq
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6igmG (G:)
    mttlvldngaynakigyshenvsvipncqfrsktarlktftanqideikdpsglfyilpf
    qkgylvnwdvqrqvwdylfgkemyqvdfldtniiitepyfnftsiqesmneilfeeyqfq
    avlrvnagalsahryfrdnpselcciivdsgysfthivpycrskkkkeaiirinvggkll
    tnhlkeiisyrqlhvmdethvinqvkedvcyvsqdfyrdmdiaklkgeentvmidyvlpd
    fstikkgfckpreemvlsgkyksgeqilrlanerfavpeilfnpsdigiqemgipeaivy
    siqnlpeemqphffknivltggnslfpgfrdrvysevrcltptdydvsvvlpenpityaw
    eggklisenddfedmvvtredyeenghsvceekfdi
    

    Sequence, based on observed residues (ATOM records):
    >6igmG (G:)
    mttlvldngaynakigyshenvsvipncqfrsktarlktftanqideikdpsglfyilpf
    qkgylvnwdvqrqvwdylfgkemyqvdfldtniiitepyfnftsiqesmneilfeeyqfq
    avlrvnagalsahryfrdnpselcciivdsgysfthivpycrskkkkeaiirinvggkll
    tnhlkeiisyrqlhvmdethvinqvkedvcyvsqdfyrdmdiaklkgeentvmidyvlil
    rlanerfavpeilfnpsdigiqemgipeaivysiqnlpeemqphffknivltggnslfpg
    frdrvysevrcltptdydvsvvlpenpityaweggklisenddfedmvvtredyeenghs
    vceekf
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6igmH (H:)
    mqsspspahpqlpvlqtqmvsdgmtgsnpvspasssspassgaggispqhiaqdssldgp
    pgppdgatvplegfslsqaadlankgpkwekshaeiaeqakheaeietriaelrkegfws
    lkrlpkvpepprpkghwdylceemqwlsadfaqerrwkrgvarkvvrmvirhheeqrqke
    erarreeqaklrriastmakdvrqfwsnvekvvqfkqqsrleekrkkaldlhldfivgqt
    ekysdllsqslnqpltsskagsspclgsssaassppppasrlddedgdfqpqedeeedde
    etieveeqqegndaeaqrreiellrregelpleellrslppqllegpsspsqtpsshdsd
    trdgpeegaeeeppqvleikpppsavtqrnkqpwhpdeddeeftaneeeaedeedtiaae
    eqlegevdhamelselaregelsmeellqqyagayapgsgssedededevdanssdcepe
    gpveaeeppqedsssqsdsvedrsedeedehseeeetsgssaseeseseesedaqsqsqa
    deeeedddfgveyllardeeqseadagsgpptpgpttlgpkkeitdiaaaaeslqpkgyt
    lattqvktpiplllrgqlreyqhigldwlvtmyekklngilademglgktiqtisllahl
    acekgnwgphliivptsvmlnwemelkrwcpsfkiltyygaqkerklkrqgwtkpnafhv
    citsyklvlqdhqafrrknwrylildeaqniknfksqrwqsllnfnsqrrllltgtplqn
    slmelwslmhflmphvfqshrefkewfsnpltgmiegsqeyneglvkrlhkvlrpfllrr
    vkvdvekqmpkkyehvircrlskrqrclyddfmaqtttketlatghfmsvinilmqlrkv
    cnhpnlfdprpvtspfitpgicfstaslvlratdvhplqridmgrfdliglegrvsryea
    dtflprhrlsrrvllevatapdppprpkpvkmkvnrmlqpvpkqegrtvvvvnnpraplg
    pvpvrpppgpelsaqptpgpvpqvlpaslmvsaspagpplipasrppgpvllpplqpnsg
    slpqvlpsplgvlsgtsrpptptlslkptppapvrlspapppgsssllkpltvppgytfp
    paaatttstttatatttavpaptpapqrlilspdmqarlpsgevvsigqlaslaqrpvan
    aggskpltfqiqgnkltltgaqvrqlavgqprplqrnvvhlvsaggqhhlisqpahvali
    qavaptpgptpvsvlpsstpsttpaptglslplaanqvpptmvnntgvvkivvrqaprdg
    ltpvpplapaprppssglpavlnprptltpgrlptptlgtarapmptptlvrpllklvhs
    pspevsasapgaapltissplhvpsslpgpasspmpipnssplaspvsstvsvplssslp
    isvpttlpapasapltipisapltvsasgpalltsvtpplapvvpaapgppslapsgasp
    sasaltlglatapslsssqtpghplllaptsshvpglnstvapacspvlvpasalaspfp
    sapnpapaqasllapassasqalatplapmaapqtailapspapplaplpvlapspgaap
    vlassqtpvpvmapsstpgtslasaspvpaptpvlapsstqtmlpapvpsplpspastqt
    lalapalaptlggsspsqtlslgtgnpqgpfptqtlsltpasslvptpaqtlslapgppl
    gptqtlslapapplapaspvgpapahtltlapasssasllapasvqtltlspapvptlgp
    aaaqtlalapastqspasqasslvvsasgaaplpvtmvsrlpvskdepdtltlrsgppsp
    pstatsfggprprrqppppprspfyldsleekrkrqrserlerifqlseahgalapvygt
    evldfctlpqpvaspigprspgpshptfwtyteaahravlfpqqrldqlseiierfifvm
    ppveapppslhachpppwlaprqaafqeqlaselwprarplhrivcnmrtqfpdlrliqy
    dcgklqtlavllrqlkaeghrvliftqmtrmldvleqfltyhghlylrldgstrveqrqa
    lmerfnadkrifcfilstrsggvgvnltgadtvvfydsdwnptmdaqaqdrchrigqtrd
    vhiyrlisertveenilkkanqkrmlgdmaieggnfttayfkqqtirelfdmpleepsss
    svpsapeeeeetvaskqthileqalcraedeediraatqakaeqvaelaefnendgfpag
    egeeagrpgaedeemsraeqeiaalveqltpieryamkfleasleevsreelkqaeeqve
    aarkdldqakeevfrlpqeeeegpgagdesscgtgggthrrskkakaperpgtrvserlr
    garaetqganhtpvisahqtrstttpprcsparervprpaprprptpasapaaipalvpv
    pvsapvpisapnpitilpvhilpsppppsqippcsspactpppactpppahtpppaqtcl
    vtpssplllgppsvpisasvtnlplglrpeaelcaqalaspeslelasvassetsslslv
    ppkdllpvaveilpvseknlsltpsapsltleagsipngqeqeapdsaegttltvlpege
    elplcvsesnglelppsaasdeplqepleadrtseelteaktptsspekpqelvtaevaa
    pstsssatsspegpsparpprrrtsadveirgqgtgrpgqppgpkvlrklpgrlvtvvee
    kelvrrrrqqrgaastlvpgvsetsaspgspsvrsmsgpessppiggpceaapssslptp
    pqqpfiarrhielgvtgggspengdgallaitppavkrrrgrppkknrspadagrgvdea
    psstlkgktngadpvpgpetlivadpvlepqlipgpqplgpqpvhrpnpllspvekrrrg
    rppkardlpipgtissagdgnsesrtqppphpspltplppllvcptatvantvttvtist
    sppkrkrgrppknppsprpsqlpvldrdstsvlescglgrrrqpqgqgesegsssdedgs
    rpltrlarlrleaegmrgrksggsmvvaviqddldladsgpggleltppvvsltpklrst
    rlrpgslvppleteklprkragapvggspglakrgrlqppsplgpegsveeseaeasgee
    eegdgtprrrpgprrlvgttnqgdqrilrssappslagpavshrgrkakt
    

    Sequence, based on observed residues (ATOM records):
    >6igmH (H:)
    kkyehvircrlskrqrclyddfmailmqlrkvcnhpnlfdprpvtspfitpgicfstasl
    vlratdvhplqridmgrfdliglegrvsryeadtflprhrlsrrvlrlerifqlseahga
    lapvygtevldfctlpqpvaspigprsvlfpqqrldqlseiierfifvmppveapppslh
    achpppwlaprqaafqeqlaselwprarplhrivcnmrtqfpdlrliqydcgklqtlavl
    lrqlkaeghrvliftqmtrmldvleqfltyhghlylrldgstrveqrqalmerfnadkri
    fcfilstrsggvgvnltgadtvvfydsdwnptmdaqaqdrchdvhiyrlisertveenil
    kkanqkrmlgdma
    

  • Chain 'X':
    Sequence; same for both SEQRES and ATOM records:
    >6igmX (X:)
    xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
    xx