PDB entry 6igf

View 6igf on RCSB PDB site
Description: Crystal structure of Human Papillomavirus type 52 pentamer
Class: structural protein
Keywords: Human Papillomavirus type 52 capsid protein, STRUCTURAL PROTEIN
Deposited on 2018-09-25, released 2018-11-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-01-02, with a file datestamp of 2018-12-28.
Experiment type: XRAY
Resolution: 2.75 Å
R-factor: N/A
AEROSPACI score: 0.17 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfa_
  • Chain 'B':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfb_
  • Chain 'C':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfc_
  • Chain 'D':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfd_
  • Chain 'E':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfe_
  • Chain 'F':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igff_
  • Chain 'G':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfg_
  • Chain 'H':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfh_
  • Chain 'I':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfi_
  • Chain 'J':
    Compound: Major capsid protein L1
    Species: Human papillomavirus type 52 [TaxId:10618]
    Gene: L1
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6igfj_

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6igfA (A:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfA (A:)
kvvstdeyvsrtsiyyyagssrlltvghpyfsiknkkvlvpkvsglqyrvfriklpdpnk
fgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgid
nreclsmdykqtqlcilgckppigehwgkgtpcnpgdcpplqlinsviqdgdmvdtgfgc
mdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtl
gdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicw
gnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltad
vmtyihkmdatiledwqfedplkdymfwevdlkekfsadldqfplgrkfllqa

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6igfB (B:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfB (B:)
pvpvskvvstdeyvsrtsiyyyagssrlltvghpyfsikntgkkvlvpkvsglqyrvfri
klpdpnkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnky
agkpgidnreclsmdykqtqlcilgckppigehwgkgtpnpgdcpplqlinsviqdgdmv
dtgfgcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhff
nragtlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqgh
nngicwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlck
itltadvmtyihkmdatiledwqfedplkdymfwevdlkekfsadldqfplgrkfllqag
l

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6igfC (C:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfC (C:)
skvvstdeyvsrtsiyyyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfri
klpdpnkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnky
agkpgidnreclsmdykqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsvi
qdgdmvdtgfgcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqm
fvrhffnragtlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywl
qraqghnngicwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqf
ifqlckitltadvmtyihkmdatiledwqfedplkdymfwevdlkekfsadldqfplgrk
fllqagl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6igfD (D:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfD (D:)
kvvstdeyvsrtsiyyyagssrlltvghpyfsikntgkkvlvpkvsglqyrvfriklpdp
nkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpg
idnreclsmdykqtqlcilgckppigehwgkgtpcgnpgdcpplqlinsviqdgdmvdtg
fgcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnra
gtlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnng
icwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitl
tadvmtyihkmdatiledwqfdplkdymfwevdlkekfsadldqfplgrkfllq

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6igfE (E:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfE (E:)
pvpvskvvstdeyvsrtsiyyyagssrlltvghpyfsikntgkkvlvpkvsglqyrvfri
klpdpnkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnky
agkpgidnreclsmdykqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsvi
qdgdmvdtgfgcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqm
fvrhffnragtlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywl
qraqghnngicwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqf
ifqlckitltadvmtyihkmdatiledwqfdplkdymfwevdlkekfsadldqfplgrkf
llqaglqar

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6igfF (F:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfF (F:)
kvvstdeyvsrtsiyyyagssrlltvghpyfsikntgkkvlvpkvsglqyrvfriklpdp
nkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpg
idnreclsmdykqtqlcilgckppigehwgkgtpcnpgdcpplqlinsviqdgdmvdtgf
gcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnrag
tlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngi
cwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitlt
advmtyihkmdatiledwqfedplkdymfwevdlkekfsadldqfplgrkfllqagl

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6igfG (G:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfG (G:)
kvvstdeyvsrtsiyyyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfrik
lpdpnkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkya
gkpgidnreclsmdykqtqlcilgckppigehwgkgtpnpgdcpplqlinsviqdgdmvd
tgfgcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffn
ragtlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghn
ngicwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlcki
tltadvmtyihkmdatiledwqfedplkdymfwevdlkekfsadldqfplgrkfllqa

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6igfH (H:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfH (H:)
kvvstdeyvsrtsiyyyagssrlltvghpyfsikntgkkvlvpkvsglqyrvfriklpdp
nkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpg
idnreclsmdykqtqlcilgckppigehwgkgtpcnpgdcpplqlinsviqdgdmvdtgf
gcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnrag
tlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngi
cwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitlt
advmtyihkmdatiledwqfedplkdymfwevdlkekfsadldqfplgrkfllqag

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >6igfI (I:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfI (I:)
kvvstdeyvsrtsiyyyagssrlltvghpyfsikntgkkvlvpkvsglqyrvfriklpdp
nkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpg
idnreclsmdykqtqlcilgckppigehwgkgtpcgnpgdcpplqlinsviqdgdmvdtg
fgcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnra
gtlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnng
icwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitl
tadvmtyihkmdatiledwqfdplkdymfwevdlkekfsadldqfplgrkfllqag

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >6igfJ (J:)
mvqilfyilvifyyvagvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrlltvghpyfsikntssgngkkvlvpkvsglqyrvfriklpdpnkfgfpdtsfy
npetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagkpgidnreclsmdy
kqtqlcilgckppigehwgkgtpcnnnsgnpgdcpplqlinsviqdgdmvdtgfgcmdfn
tlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnragtlgdpv
pgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnngicwgnql
fvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckitltadvmty
ihkmdatiledwqfgltpppsasledtyrfvtstaitcqkntppkgkedplkdymfwevd
lkekfsadldqfplgrkfllqaglqarpklkrpassaprtstkkkkvkr

    Sequence, based on observed residues (ATOM records): (download) 
    >6igfJ (J:)
vskvvstdeyvsrtsiyyyagssrlltvghpyfsikntgkkvlvpkvsglqyrvfriklp
dpnkfgfpdtsfynpetqrlvwactgleigrgqplgvgisghpllnkfddtetsnkyagk
pgidnreclsmdykqtqlcilgckppigehwgkgtpgnpgdcpplqlinsviqdgdmvdt
gfgcmdfntlqasksdvpidicssvckypdylqmasepygdslffflrreqmfvrhffnr
agtlgdpvpgdlyiqgsnsgntatvqssaffptpsgsmvtsesqlfnkpywlqraqghnn
gicwgnqlfvtvvdttrstnmtlcaevkkestyknenfkeylrhgeefdlqfifqlckit
ltadvmtyihkmdatiledwqfdplkdymfwevdlkekfsadldqfplgrkfllqag