SCOPe 2.08: Structural Classification of Proteins

PDB entry 6igd

View 6igd on RCSB PDB site
Description: Crystal structure of HPV58/33 chimeric L1 pentamer
Class: structural protein
Keywords: capsid protein, STRUCTURAL PROTEIN
Deposited on 2018-09-25, released 2018-11-21
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-01-02, with a file datestamp of 2018-12-28.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (201)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igda_
Chain 'B':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igdb_
Chain 'C':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (201)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igdc_
Chain 'D':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igdd_
Chain 'E':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (201)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igde_
Chain 'F':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (201)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igdf_
Chain 'G':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igdg_
Chain 'H':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (201)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igdh_
Chain 'I':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (201)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igdi_
Chain 'J':
Compound: Major capsid protein L1
Species: Human papillomavirus type 58 [TaxId:10598]
Gene: L1
Database cross-references and differences (RAF-indexed):
- Uniprot P26535
  - engineered mutation (79)
  - engineered mutation (81)
  - engineered mutation (83)
  - engineered mutation (86)
  - engineered mutation (201)
  - engineered mutation (377)
Domains in SCOPe 2.08: d6igdj_
Heterogens: HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>6igdA (A:)
mvlilcctlailfcvadvnvfhiflqmsvwrpseatvylppvpvskvvstdeyvsrtsiy
yyagssrllavgnpyfsiknptnakkllvpkvsglqyrvfrvrlpdpnkfgfpdtsfynp
dtqrlvwacvgleigrgqplgvgvsghpylnkfddtetsnrypaqpgsdnreclsmdykq
tqlcligckpptgehwgkgvasnnnaaatdcpplelfnsiiedgdmvdtgfgcmdfgtlq
anksdvpidicnstckypdylkmasepygdslffflrreqmfvrhffnragklgeavpdd
lyikgsgntaviqssaffptpsgsivtsesqlfnkpywlqraqghnngicwgnqlfvtvv
dttrstnmtlctevtkestykndnfkeyvrhveeydlqfvfqlckitltaeimtyihtmd
sniledwqfgltpppsaslqdtyrfvtsqaitcqktappkekedplnkytfwevnlkekf
sadldqfplgrkfllqsglkakprlkrsapttrapstkrkkvkk