PDB entry 6ifu

View 6ifu on RCSB PDB site
Description: cryo-em structure of type iii-a csm-ctr2-dsdna complex
Deposited on 2018-09-21, released 2018-12-12
The last revision was dated 2019-05-22, with a file datestamp of 2019-05-17.
Experiment type: EM
Resolution: 3.6 Å
R-factor: N/A
AEROSPACI score: 0.08 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type III-A CRISPR-associated protein Csm1
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Type III-A CRISPR-associated protein Csm2
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Type III-A CRISPR-associated protein Csm2
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Type III-A CRISPR-associated RAMP protein Csm4
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm4
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Type III-A CRISPR-associated RAMP protein Csm5
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm5
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: crRNA
    Species: Streptococcus thermophilus ND03, synthetic [TaxId:767463]
  • Chain 'J':
    Compound: ctr2
    Species: Streptococcus thermophilus ND03, synthetic [TaxId:767463]

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ifuA (A:)
mkkekidlfygalladigkviqratgerkkhalvgadwfdeiadnqvisdqiryhmanyq
sdklgndhlayityiadniasgvdrrqsneesdedtsakiwdtytnqadifnvfgaqtdk
ryfkptvlnlkskpnfasatyepfskgdyaaiatriknelaefefnqvqidsllnlfeat
lsfvpsstntkeiadisladhsrltaafalaiydyledkgrhnykedlftkvsafyeeea
fllasfdlsgiqdfiyniniatngaakqlkarslyldfmseyiadslldklglnranmly
vggghayfvlantektvetlvqfekdfnqfllanfqtrlyvafgwgsfaakdimselnsp
esyrqvyqkasrmiskkkisrydyqtlmllnrggkssereceichsvenlvsyhdqkvcd
icrglyqfskeiahdhfiiteneglpigpnaclkgvafeklsqeafsrvyvkndykagtv
kathvfvgdyqcdeiynyaalsknenglgikrlavvrldvddlgaafmagfsqqgngqys
tlsrsatfsrsmslffkvyinqfasdkklsiiyaggddvfaigswqdiiaftvelrenfi
kwtngkltlsagiglfadktpislmahqtgeleeaakgnekdsislfssdytfkfdrfit
nvyddkleqiryffnhqdergknfiykliellrnhdrmnmarlayyltrleeltretdrd
kfktfknlfyswytnkndkdrkeaelalllyiyeirkd

    Sequence, based on observed residues (ATOM records):
    >6ifuA (A:)
kkekidlfygalladigkviqratgerkkhalvgadwfdeiadnqvisdqiryhmlayit
yiadniasgytnqadifnvfgaqkryfkptvlnlkskpnfasatyepfskgdyaaiatri
knelaefefnqvqidsllnlfeatlsfvpsstntkeiadisladhsrltaafalaiydyl
edkgsafyeeeafllasfdlsgiqdfiyniniatngaakqlkarslyldfmseyiadsll
dklglnranmlyvggghayfvlantektvetlvqfekdfnqfllanfqtrlyvafgwgsf
aakdimnspesyrqvyqkasrmiskkkisrydyqtlmllnrggkssereceichsvenlv
syhdqkvcdicrglyqfskeiahdhfiiteneglpigpnaclkgvafeklsqeafsrvyv
kndykagtvkathvfvgdyqcdeiynyaalsknenglgikrlavvrldvddlgaafmagf
sqqgngqystlsrsatfsrsmslffkvyinqfasdkklsiiyaggddvfaigswqdiiaf
tvelrenfikwtngkltlsagiglfadktpislmahqtgeleeaakgnekdsislfssdy
tfkfdrfitnvyddkleqiryffnhqdergknfiykliellrnhdrmnmarlayyltrle
eltretdrdkfktfknlfyswytnkndkdrkeaelalllyiyeirk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ifuB (B:)
mtiltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeyd
alldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfk
fyggkd

    Sequence, based on observed residues (ATOM records):
    >6ifuB (B:)
iltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeydal
ldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkfy
g

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ifuC (C:)
mtiltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeyd
alldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfk
fyggkd

    Sequence, based on observed residues (ATOM records):
    >6ifuC (C:)
iltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeydal
ldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkfy
g

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ifuD (D:)
mtfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6ifuD (D:)
tfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtlla
kvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevk
fentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldy
lggsgsrgygkvafenlkattvfgnydvktlnellta

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ifuE (E:)
mtfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6ifuE (E:)
tfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtlla
kvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevk
fentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldy
lggsgsrgygkvafenlkattvfgnydvktlnellt

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ifuF (F:)
mtfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6ifuF (F:)
tfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtlla
kvynesdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevkfentidrit
aeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldylggsgsrgy
gkvafenlkattvfgnydvktlnellt

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ifuG (G:)
mtyklyimtfqnahfgsgtldsskltfsadrifsalvlealkmgkldaflaeanqdkftl
tdafpfqfgpflpkpigypkhdqidqsvdvkevrrqaklskklqflalenvddylngelf
eneehavidtvtknqphkddnlyqvattrfsndtslyvianesdllnelmsslqysglgg
krssgfgrfeldiqniplelsdrltknhsdkvmslttalpvdadleeamedghylltkss
gfafshatnenyrkqdlykfasgstfsktfegqivdvrpldfphavlnyakplffklev

    Sequence, based on observed residues (ATOM records):
    >6ifuG (G:)
tyklyimtfqnahfgsgtldsskltfsadrifsalvlealkmgkldaflaeanqdkftlt
dafpfqfgpflpkpigypqflalenvddylngelfeneehavidtvtknqphkddnlyqv
attrfsndtslyvianesdllnelmsslqysglggkrssgfgrfeldiqniplelsdrlt
knhsdkvmslttalpvdadleeamedghylltkssgfafshatnenyrkqdlykfasgst
fsktfegqivdvrpldfphavlnyakplffkl

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ifuH (H:)
mkndyrtfklslltlapihigngekytsrefiyenkkfyfpdmgkfynkmvekrlaekfe
afliqtrpnarnnrlisflndnriaersfggysisetglesdknpnsagainevnkfird
afgnpyipgsslkgairtilmnttpkwnnenavndfgrfpkenknlipwgpkkgkeyddl
fnairvsdskpfdnkslilvqkwdysaktnkakplplyresispltkiefeittttdeag
rlieelgkraqafykdykafflsefpddkiqanlqypiylgagsgawtktlfkqadgilq
rrysrmktkmvkkgvlkltkaplktvkipsgnhslvknhesfyemgkanfmikeidk

    Sequence, based on observed residues (ATOM records):
    >6ifuH (H:)
ndyrtfklslltlapihigngekytsrefiyenkkfyfpdmgkfynkmvekrlaekfeaf
liqtrpnarnnrlisflndnriaersfggysisetglesnsagainevnkfirdafgnpy
ipgsslkgairtilmnttpkwnnenavndfgrfpkenknlipwgpkkgkeyddlfnairv
sdskpfdnkslilvqkwdysaktnkakplplyresispltkiefeittttdeagrlieel
gkraqafykdykafflsefpddkiqanlqypiylgagsgawtktlfkqadgilqrrysrm
ktkmvkkgvlkltkaplktslvknhesfyemgkanfmikei

  • Chain 'I':
    No sequence available.

  • Chain 'J':
    No sequence available.