PDB entry 6ifr

View 6ifr on RCSB PDB site
Description: type iii-a csm complex, cryo-em structure of csm-ntr, atp bound
Deposited on 2018-09-21, released 2018-12-12
The last revision was dated 2019-01-23, with a file datestamp of 2019-01-18.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.1 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type III-A CRISPR-associated protein Csm1
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2U2M0F3 (Start-757)
      • engineered mutation (15)
  • Chain 'B':
    Compound: Type III-A CRISPR-associated RAMP protein Csm4
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm4
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Type III-A CRISPR-associated protein Csm2
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Type III-A CRISPR-associated protein Csm2
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A2U2M035 (0-End)
      • engineered mutation (32)
  • Chain 'G':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Type III-A CRISPR-associated RAMP protein Csm5
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm5
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: type III-A CRISPR-Cas interference complex, NTR
    Species: Streptococcus thermophilus ND03, synthetic [TaxId:767463]
  • Chain 'N':
    Compound: type III-A CRISPR-Cas interference complex, crRNA
    Species: Streptococcus thermophilus ND03, synthetic [TaxId:767463]
  • Heterogens: ATP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ifrA (A:)
mkkekidlfygallhnigkviqratgerkkhalvgadwfdeiadnqvisdqiryhmanyq
sdklgndhlayityiadniasgvdrrqsneesdedtsakiwdtytnqadifnvfgaqtdk
ryfkptvlnlkskpnfasatyepfskgdyaaiatriknelaefefnqvqidsllnlfeat
lsfvpsstntkeiadisladhsrltaafalaiydyledkgrhnykedlftkvsafyeeea
fllasfdlsgiqdfiyniniatngaakqlkarslyldfmseyiadslldklglnranmly
vggghayfvlantektvetlvqfekdfnqfllanfqtrlyvafgwgsfaakdimselnsp
esyrqvyqkasrmiskkkisrydyqtlmllnrggkssereceichsvenlvsyhdqkvcd
icrglyqfskeiahdhfiiteneglpigpnaclkgvafeklsqeafsrvyvkndykagtv
kathvfvgdyqcdeiynyaalsknenglgikrlavvrldvddlgaafmagfsqqgngqys
tlsrsatfsrsmslffkvyinqfasdkklsiiyaggddvfaigswqdiiaftvelrenfi
kwtngkltlsagiglfadktpislmahqtgeleeaakgnekdsislfssdytfkfdrfit
nvyddkleqiryffnhqdergknfiykliellrnhdrmnmarlayyltrleeltretdrd
kfktfknlfyswytnkndkdrkeaelalllyiyeirkd

    Sequence, based on observed residues (ATOM records):
    >6ifrA (A:)
kkekidlfygallhnigkviqratgerkkhalvgadwfdeiadnqvisdqiryhmadhla
yityiadniasgytnqadifnvfgaqtdkryfkptvlnlkskpnfasatyepfskgdyaa
iatriknelaefefnqvqidsllnlfeatlsfvpsstntkeiadisladhsrltaafala
iydyledkgrhnykedlftkvsafyeeeafllasfdlsgiqdfiyniaakqlkarslyld
fmseyiadslldklglnranmlyvggghayfvlantektvetlvqfekdfnqfllanfqt
rlyvafgwgsfaakdimselnspesyrqvyqkasrmiskkkisrydyqtlmllnrdicrg
lyqfskeiahdhfiiteneglpigpnaclkgvafeklsqeafsrvyvkndykagtvkath
vfvgdyqcdeiynyaalsknenglgikrlavvrldvddlgaafmagfsqqgngqystlsr
satfsrsmslffkvyinqfasdkklsiiyaggddvfaigswqdiiaftvelrenfikwtn
gkltlsagiglfadktpislmahqtgeleeaakgnekdsislfssdytfkfdrfitnvyd
dkleqiryffnhqdergknfiykliellrnhdrmnmarlayyltrleeltretdrdkfkt
fknlfyswytnkndkdrkeaelalllyiyeirkd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ifrB (B:)
mtyklyimtfqnahfgsgtldsskltfsadrifsalvlealkmgkldaflaeanqdkftl
tdafpfqfgpflpkpigypkhdqidqsvdvkevrrqaklskklqflalenvddylngelf
eneehavidtvtknqphkddnlyqvattrfsndtslyvianesdllnelmsslqysglgg
krssgfgrfeldiqniplelsdrltknhsdkvmslttalpvdadleeamedghylltkss
gfafshatnenyrkqdlykfasgstfsktfegqivdvrpldfphavlnyakplffklev

    Sequence, based on observed residues (ATOM records):
    >6ifrB (B:)
tyklyimtfqnahfgsgtldsskltfsadrifsalvlealkmgkldaflaeanqdkftlt
dafpfqfgpflpkpigypkdvkevrrqaklskklqflalenvddylngelfeneehavid
tvtknqphkddnlyqvattrfsndtslyvianesdllnelmsslqysglggkrssgfgrf
eldiqniplelsdrltknhsdkvmslttalpvdadleeamedghylltkssgfafshatn
enyrkqdlykfasgstfsktfegqivdvrpldfphavlnyakplffkl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ifrC (C:)
mtiltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeyd
alldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfk
fyggkd

    Sequence, based on observed residues (ATOM records):
    >6ifrC (C:)
iltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeydal
ldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkfy
g

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ifrD (D:)
mtiltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeyd
alldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfk
fyggkd

    Sequence, based on observed residues (ATOM records):
    >6ifrD (D:)
iltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeydal
ldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkfy
g

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ifrE (E:)
mtfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6ifrE (E:)
tfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtlla
kvyndilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevkfentidritae
anprqierairnstfdfeliyeitdenenqveedfkvirdglklleldylggsgsrgygk
vafenlkattvfgnydvktlnellt

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ifrF (F:)
mtfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6ifrF (F:)
mtfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnellt

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6ifrG (G:)
mtfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6ifrG (G:)
tfakikfsaqirletglhiggsdafaaigainspvikdpitnlpiipgsslkgkmrtlla
kvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytevk
fentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleldy
lggsgsrgygkvafenlkattvfgnydvktlnellta

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ifrH (H:)
mkndyrtfklslltlapihigngekytsrefiyenkkfyfpdmgkfynkmvekrlaekfe
afliqtrpnarnnrlisflndnriaersfggysisetglesdknpnsagainevnkfird
afgnpyipgsslkgairtilmnttpkwnnenavndfgrfpkenknlipwgpkkgkeyddl
fnairvsdskpfdnkslilvqkwdysaktnkakplplyresispltkiefeittttdeag
rlieelgkraqafykdykafflsefpddkiqanlqypiylgagsgawtktlfkqadgilq
rrysrmktkmvkkgvlkltkaplktvkipsgnhslvknhesfyemgkanfmikeidk

    Sequence, based on observed residues (ATOM records):
    >6ifrH (H:)
ndyrtfklslltlapihigngekytsrefiyenkkfyfpdmgkfynkmvekrlaekfeaf
liqtrpnarnnrlisflndnriaersfggysisetglesdknpnsagainevnkfirdaf
gnpyipgsslkgairtilmnttpkwnnenavndfgrfpkenknlipwgpkkgkeyddlfn
airvsdskpfdnkslilvqkwdysaktnkakplplyresispltkiefeittttdeagrl
ieelgkraqafykdykafflsefpddkiqanlqypiylgagsgawtktlfkqadgilqrr
ysrmktkmvkkgvlkltkaplktvkipsgnhslvknhesfyemgkanfmikei

  • Chain 'J':
    No sequence available.

  • Chain 'N':
    No sequence available.