PDB entry 6ifn

View 6ifn on RCSB PDB site
Description: crystal structure of type iii-a crispr csm complex
Deposited on 2018-09-20, released 2018-12-12
The last revision was dated 2019-01-23, with a file datestamp of 2019-01-18.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.14 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Type III-A CRISPR-associated protein Csm1
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Type III-A CRISPR-associated RAMP protein Csm4
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm4
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Type III-A CRISPR-associated protein Csm2
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Type III-A CRISPR-associated protein Csm2
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: CSM2
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Type III-A CRISPR-associated RAMP protein Csm3
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm3
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: Type III-A CRISPR-associated RAMP protein Csm5
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
    Gene: csm5
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: RNA (32-mer)
    Species: Streptococcus thermophilus ND03 [TaxId:767463]
  • Heterogens: ZN, MN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ifnA (A:)
mkkekidlfygallhdigkviqratgerkkhalvgadwfdeiadnqvisdqiryhmanyq
sdklgndhlayityiadniasgvdrrqsneesdedtsakiwdtytnqadifnvfgaqtdk
ryfkptvlnlkskpnfasatyepfskgdyaaiatriknelaefefnqvqidsllnlfeat
lsfvpsstntkeiadisladhsrltaafalaiydyledkgrhnykedlftkvsafyeeea
fllasfdlsgiqdfiyniniatngaakqlkarslyldfmseyiadslldklglnranmly
vggghayfvlantektvetlvqfekdfnqfllanfqtrlyvafgwgsfaakdimselnsp
esyrqvyqkasrmiskkkisrydyqtlmllnrggkssereceichsvenlvsyhdqkvcd
icrglyqfskeiahdhfiiteneglpigpnaclkgvafeklsqeafsrvyvkndykagtv
kathvfvgdyqcdeiynyaalsknenglgikrlavvrldvddlgaafmagfsqqgngqys
tlsrsatfsrsmslffkvyinqfasdkklsiiyaggddvfaigswqdiiaftvelrenfi
kwtngkltlsagiglfadktpislmahqtgeleeaakgnekdsislfssdytfkfdrfit
nvyddkleqiryffnhqdergknfiykliellrnhdrmnmarlayyltrleeltretdrd
kfktfknlfyswytnkndkdrkeaelalllyiyeirkd

    Sequence, based on observed residues (ATOM records):
    >6ifnA (A:)
mkkekidlfygallhdigkviqratgerkkhalvgadwfdeiadnqvisdqiryhmadkl
gndhlayityiadniasgvdrtytnqadifnvfgaqtdkryfkptvlnlkskpnfasaty
epfskgdyaaiatriknelaefefnqvqidsllnlfeatlsfvpsstntkeiadisladh
srltaafalaiydyledkgrhnykedlftkvsafyeeeafllasfdlsgiqdfiyninia
tngaakqlkarslyldfmseyiadslldklglnranmlyvggghayfvlantektvetlv
qfekdfnqfllanfqtrlyvafgwgsfaakdimnspesyrqvyqkasrmiskkkisrydy
qtlmllnrggkssereceichsvenlvsyhdqkvcdicrglyqfskeiahdhfiiteneg
lpigpnaclkgvafeklsqeafsrvyvkndykagtvkathvfvgdyqcdeiynyaalskn
englgikrlavvrldvddlgaafmagfsqqgngqystlsrsatfsrsmslffkvyinqfa
sdkklsiiyaggddvfaigswqdiiaftvelrenfikwtngkltlsagiglfadktpisl
mahqtgeleeaakgnekdsislfssdytfkfdrfitnvyddkleqiryffnhqdergknf
iykliellrnhdrmnmarlayyltrleeltretdrdkfktfknlfyswytnkndkdrkea
elalllyiyeirk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ifnB (B:)
mtyklyimtfqnahfgsgtldsskltfsadrifsalvlealkmgkldaflaeanqdkftl
tdafpfqfgpflpkpigypkhdqidqsvdvkevrrqaklskklqflalenvddylngelf
eneehavidtvtknqphkddnlyqvattrfsndtslyvianesdllnelmsslqysglgg
krssgfgrfeldiqniplelsdrltknhsdkvmslttalpvdadleeamedghylltkss
gfafshatnenyrkqdlykfasgstfsktfegqivdvrpldfphavlnyakplffklev

    Sequence, based on observed residues (ATOM records):
    >6ifnB (B:)
tyklyimtfqnahfgsgtldsskltfsadrifsalvlealkmgkldaflaeanqdkftlt
dafpfqfgpflpkpigypkhdqidqsvdvkevrrqaklskklqflalenvddylngelfe
neehavidtvtknqphkddnlyqvattrfsndtslyvianesdllnelmsslqysglggk
rssgfgrfeldiqniplelsdrltknhsdkvmslttalpvdadleeamedghylltkssg
fafshatnenyrkqdlykfasgstfsktfegqivdvrpldfphavlnyakplffkle

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ifnC (C:)
mtiltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeyd
alldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfk
fyggkd

    Sequence, based on observed residues (ATOM records):
    >6ifnC (C:)
tiltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeyda
lldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkf
yggk

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ifnD (D:)
mtiltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeyd
alldriaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfk
fyggkd

    Sequence, based on observed residues (ATOM records):
    >6ifnD (D:)
ltdenyvdiaekailklerntrnrknpdafflttsklrnllsltstlfdeskvkeydall
driaylrvqfvyqagreiavkdliekaqilealkeikdretlqrfcrymealvayfkfyg
gkd

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ifnE (E:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

    Sequence, based on observed residues (ATOM records):
    >6ifnE (E:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltae

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6ifnF (F:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6ifnG (G:)
mtfakikfsaqirletglhiggsdafaaigaidspvikdpitnlpiipgsslkgkmrtll
akvynekvaekpsddsdilsrlfgnskdkrfkmgrlifrdaflsnadeldslgvrsytev
kfentidritaeanprqierairnstfdfeliyeitdenenqveedfkvirdglklleld
ylggsgsrgygkvafenlkattvfgnydvktlnelltaev

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ifnH (H:)
mkndyrtfklslltlapihigngekytsrefiyenkkfyfpdmgkfynkmvekrlaekfe
afliqtrpnarnnrlisflndnriaersfggysisetglesdknpnsagainevnkfird
afgnpyipgsslkgairtilmnttpkwnnenavndfgrfpkenknlipwgpkkgkeyddl
fnairvsdskpfdnkslilvqkwdysaktnkakplplyresispltkiefeittttdeag
rlieelgkraqafykdykafflsefpddkiqanlqypiylgagsgawtktlfkqadgilq
rrysrmktkmvkkgvlkltkaplktvkipsgnhslvknhesfyemgkanfmikeidk

    Sequence, based on observed residues (ATOM records):
    >6ifnH (H:)
ndyrtfklslltlapihigngekytsrefiyenkkfyfpdmgkfynkmvekrlaekfeaf
liqtrpnnnrlisflndnriaersfggysisetglesdknainevnkfirdafgnpyipg
sslkgairtilmnttpkwnnenavnrfpkenknlipwgpkkgkeyddlfnairvsdskpf
dnkslilvqkwdysaktnkakplplyresispltkiefeittttdeagrlieelgkraqa
fykdykafflsefpddkiqanlqypiylgagsgawtktlfkqadgilqrrysrmktkmvk
kgvlkltkaplktvkipsgnhslvknhesfyemgkanfmikeidk

  • Chain 'N':
    No sequence available.