PDB entry 6ifm

View 6ifm on RCSB PDB site
Description: crystal structure of dna bound vapbc from salmonella typhimurium
Deposited on 2018-09-20, released 2020-01-29
The last revision was dated 2020-02-26, with a file datestamp of 2020-02-21.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: tRNA(fMet)-specific endonuclease VapC
  Species: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [TaxId:99287]
  Gene: vapC, STM3033
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8ZM86 (0-131)
• Chain 'B':
  Compound: Antitoxin VapB
  Species: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [TaxId:99287]
  Gene: vapB, STM3034
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q7CPV2 (0-67)
• Chain 'C':
  Compound: tRNA(fMet)-specific endonuclease VapC
  Species: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [TaxId:99287]
  Gene: vapC, STM3033
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8ZM86 (0-131)
• Chain 'D':
  Compound: Antitoxin VapB
  Species: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [TaxId:99287]
  Gene: vapB, STM3034
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q7CPV2 (0-67)
• Chain 'E':
  Compound: tRNA(fMet)-specific endonuclease VapC
  Species: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [TaxId:99287]
  Gene: vapC, STM3033
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8ZM86 (0-131)
• Chain 'F':
  Compound: Antitoxin VapB
  Species: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [TaxId:99287]
  Gene: vapB, STM3034
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q7CPV2 (0-67)
• Chain 'G':
  Compound: tRNA(fMet)-specific endonuclease VapC
  Species: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [TaxId:99287]
  Gene: vapC, STM3033
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q8ZM86 (0-131)
• Chain 'H':
  Compound: Antitoxin VapB
  Species: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 [TaxId:99287]
  Gene: vapB, STM3034
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q7CPV2 (0-67)
• Chain 'M':
  Compound: DNA forward (27-MER)
  Species: synthetic construct, synthetic [TaxId:32630]
  
• Chain 'N':
  Compound: DNA backward (27-MER)
  Species: synthetic construct, synthetic [TaxId:32630]
  
• Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

• Chain 'A':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifmA (A:)
  mlkfmldtntciftiknkpehirerfnlntsrmcissitlmeliygaekslapernlavv
  egfisrlevldydtqaaihtgqiraelarkgtpvgpydqmiaghagsrglvvvtnnlref
  eripgiriedwc
  

  
  
• Chain 'B':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifmB (B:)
  mhttlffsnrtqavrlpksisfpedvkhveiiavgrsriitpvgeswdswfdgegastdf
  mstreqpa
  

  
  
• Chain 'C':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifmC (C:)
  mlkfmldtntciftiknkpehirerfnlntsrmcissitlmeliygaekslapernlavv
  egfisrlevldydtqaaihtgqiraelarkgtpvgpydqmiaghagsrglvvvtnnlref
  eripgiriedwc
  

  
  
• Chain 'D':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifmD (D:)
  mhttlffsnrtqavrlpksisfpedvkhveiiavgrsriitpvgeswdswfdgegastdf
  mstreqpa
  

  
  
• Chain 'E':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifmE (E:)
  mlkfmldtntciftiknkpehirerfnlntsrmcissitlmeliygaekslapernlavv
  egfisrlevldydtqaaihtgqiraelarkgtpvgpydqmiaghagsrglvvvtnnlref
  eripgiriedwc
  

  
  
• Chain 'F':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifmF (F:)
  mhttlffsnrtqavrlpksisfpedvkhveiiavgrsriitpvgeswdswfdgegastdf
  mstreqpa
  

  
  
• Chain 'G':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifmG (G:)
  mlkfmldtntciftiknkpehirerfnlntsrmcissitlmeliygaekslapernlavv
  egfisrlevldydtqaaihtgqiraelarkgtpvgpydqmiaghagsrglvvvtnnlref
  eripgiriedwc
  

  
  
• Chain 'H':
  Sequence; same for both SEQRES and ATOM records:
  

  >6ifmH (H:)
  mhttlffsnrtqavrlpksisfpedvkhveiiavgrsriitpvgeswdswfdgegastdf
  mstreqpa
  

  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'N':
  No sequence available.