PDB entry 6ifg

View 6ifg on RCSB PDB site
Description: crystal structure of m1 zinc metallopeptidase e323a mutant bound to tyr-ser-ala substrate from deinococcus radiodurans
Deposited on 2018-09-20, released 2019-09-25
The last revision was dated 2019-11-20, with a file datestamp of 2019-11-15.
Experiment type: XRAY
Resolution: 1.9 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Zinc metalloprotease
    Species: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) [TaxId:243230]
    Gene: DR_0875
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RVZ5 (37-End)
      • engineered mutation (324)
  • Chain 'B':
    Compound: Zinc metalloprotease
    Species: Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) [TaxId:243230]
    Gene: DR_0875
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q9RVZ5 (37-End)
      • engineered mutation (324)
  • Chain 'E':
    Compound: Tripeptides (TYR-SER-ALA)
    Species: Deinococcus, synthetic [TaxId:1298]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IFG (0-2)
  • Chain 'F':
    Compound: Tripeptides (TYR-SER-ALA)
    Species: Deinococcus, synthetic [TaxId:1298]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IFG (0-2)
  • Heterogens: ZN, FMT, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ifgA (A:)
maswshpqfekgsshhhhhhssgsgggggenlyfqgsqsvgdsifpslgqrgldvqhydl
hltvprpgephlsgdvtltvgareplsrivldllgprvsaaqwngqrvrwvqtaqkvevt
lprplrpgetgrlrliyagtpelsgdpglpirpgwqneaglsyslsephgtrgflpcndh
psdpatftvrvtvpasasaaasglfttqternglktltftqrvpvptyalglivgplerr
tapdvqlgtqtvhrrdiyaaglpagttvpegetarmlrvlsdwfgpypdevygvallpvr
qlaletaglttmpatsnrervrlhalahqwfgdqvtladwadtwlsegfatyaellwaes
qgedgqamaadwyarlsvlpsrplratreeeifdasayfrgalalhalrlkvgdaafgqf
lhsyvktftgrpvsttalltlvktqlgaeaeqtlrvwvegrtlpplpepvgapv

    Sequence, based on observed residues (ATOM records):
    >6ifgA (A:)
qsvgdsifpslgqrgldvqhydlhltvprpgephlsgdvtltvgareplsrivldllgpr
vsaaqwngqrvrwvqtaqkvevtlprplrpgetgrlrliyagtpeldpglpirpgwqnea
glsyslsephgtrgflpcndhpsdpatftvrvtvpasasaaasglfttqternglktltf
tqrvpvptyalglivgplerrtapdvqlgtqtvhrrdiyaaglpagttvpegetarmlrv
lsdwfgpypdevygvallpvrqlaletaglttmpatsnrervrlhalahqwfgdqvtlad
wadtwlsegfatyaellwaesqgedgqamaadwyarlsvlpsrplratreeeifdasayf
rgalalhalrlkvgdaafgqflhsyvktftgrpvsttalltlvktqlgaeaeqtlrvwve
grtlpplpep

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ifgB (B:)
maswshpqfekgsshhhhhhssgsgggggenlyfqgsqsvgdsifpslgqrgldvqhydl
hltvprpgephlsgdvtltvgareplsrivldllgprvsaaqwngqrvrwvqtaqkvevt
lprplrpgetgrlrliyagtpelsgdpglpirpgwqneaglsyslsephgtrgflpcndh
psdpatftvrvtvpasasaaasglfttqternglktltftqrvpvptyalglivgplerr
tapdvqlgtqtvhrrdiyaaglpagttvpegetarmlrvlsdwfgpypdevygvallpvr
qlaletaglttmpatsnrervrlhalahqwfgdqvtladwadtwlsegfatyaellwaes
qgedgqamaadwyarlsvlpsrplratreeeifdasayfrgalalhalrlkvgdaafgqf
lhsyvktftgrpvsttalltlvktqlgaeaeqtlrvwvegrtlpplpepvgapv

    Sequence, based on observed residues (ATOM records):
    >6ifgB (B:)
qsvgdsifpslgqrgldvqhydlhltvprpgephlsgdvtltvgareplsrivldllgpr
vsaaqwngqrvrwvqtaqkvevtlprplrpgetgrlrliyagtpelsdpglpirpgwqne
aglsyslsephgtrgflpcndhpsdpatftvrvtvpasasaaasglfttqternglktlt
ftqrvpvptyalglivgplerrtapdvqlgtqtvhrrdiyaaglpagttvpegetarmlr
vlsdwfgpypdevygvallpvrqlaletaglttmpatsnrervrlhalahqwfgdqvtla
dwadtwlsegfatyaellwaesqgedgqamaadwyarlsvlpsrplratreeeifdasay
frgalalhalrlkvgdaafgqflhsyvktftgrpvsttalltlvktqlgaeaeqtlrvwv
egrtlpplpepv

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6ifgE (E:)
ysa

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6ifgF (F:)
ysa