PDB entry 6ifd

View 6ifd on RCSB PDB site
Description: Crystal Structure of CMP-N-acetylneuraminate Synthetase from Vibrio cholerae in complex with CDP and Mg2+.
Class: sugar binding protein
Keywords: CMP-sialic acid synthetase, bacterial, sialic acid, CTP, Mg2+, SUGAR BINDING PROTEIN
Deposited on 2018-09-19, released 2019-07-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-07-03, with a file datestamp of 2019-06-28.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: CMP-N-acetylneuraminate Synthetase
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IFD
    Domains in SCOPe 2.08: d6ifda_
  • Chain 'B':
    Compound: CMP-N-acetylneuraminate Synthetase
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IFD
    Domains in SCOPe 2.08: d6ifdb1, d6ifdb2
  • Chain 'C':
    Compound: CMP-N-acetylneuraminate Synthetase
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IFD
    Domains in SCOPe 2.08: d6ifdc_
  • Chain 'D':
    Compound: CMP-N-acetylneuraminate Synthetase
    Species: Vibrio cholerae [TaxId:666]
    Database cross-references and differences (RAF-indexed):
    • PDB 6IFD
    Domains in SCOPe 2.08: d6ifdd_
  • Heterogens: CDP, PGE, EDO, CA, MG, PG4, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ifdA (A:)
mhhhhhhitslykkagfmsneyvalitarggskgllrknvlplhgipligwtikaaqgcs
yiskvfvstddyeiakiseglgalvinrpeelatdtassidvilhaiswleqkevqkyeg
millqptsplrtshhikeaielyektaakfvisvfepthtpiksylenddgtisglysne
apyqrrqdlprayqpngaiyafsidefklnnhfprnkvfpyvmsevesadidtledlrkv
eeqlkikeink

    Sequence, based on observed residues (ATOM records): (download) 
    >6ifdA (A:)
neyvalitarggskgllrknvlplhgipligwtikaaqgcsyiskvfvstddyeiakise
glgalvinrpeelatdtassidvilhaiswleqkevqkyegmillqptsplrtshhikea
ielyektaakfvisvfepthtpiksylenddgtisglysneprayqpngaiyafsidefk
lnnhfprnkvfpyvmsevesadidtledlrkveeqlk

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6ifdB (B:)
mhhhhhhitslykkagfmsneyvalitarggskgllrknvlplhgipligwtikaaqgcs
yiskvfvstddyeiakiseglgalvinrpeelatdtassidvilhaiswleqkevqkyeg
millqptsplrtshhikeaielyektaakfvisvfepthtpiksylenddgtisglysne
apyqrrqdlprayqpngaiyafsidefklnnhfprnkvfpyvmsevesadidtledlrkv
eeqlkikeink

    Sequence, based on observed residues (ATOM records): (download) 
    >6ifdB (B:)
fmsneyvalitarggskgllrknvlplhgipligwtikaaqgcsyiskvfvstddyeiak
iseglgalvinrpeelatdtassidvilhaiswleqkevqkyegmillqptsplrtshhi
keaielyektaakfvisvfepthtpiksylenddgtisglysneapyqrrqdlprayqpn
gaiyafsidefklnnhfprnkvfpyvmsevesadidtledlrkveeqlkikein

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6ifdC (C:)
mhhhhhhitslykkagfmsneyvalitarggskgllrknvlplhgipligwtikaaqgcs
yiskvfvstddyeiakiseglgalvinrpeelatdtassidvilhaiswleqkevqkyeg
millqptsplrtshhikeaielyektaakfvisvfepthtpiksylenddgtisglysne
apyqrrqdlprayqpngaiyafsidefklnnhfprnkvfpyvmsevesadidtledlrkv
eeqlkikeink

    Sequence, based on observed residues (ATOM records): (download) 
    >6ifdC (C:)
msneyvalitarggskgllrknvlplhgipligwtikaaqgcsyiskvfvstddyeiaki
seglgalvinrpeelatdtassidvilhaiswleqkevqkyegmillqptsplrtshhik
eaielyektaakfvisvfepthtpiksylenddgtisglysneapyqrrqdlprayqpng
aiyafsidefklnnhfprnkvfpyvmsevesadidtledlrkveeql

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6ifdD (D:)
mhhhhhhitslykkagfmsneyvalitarggskgllrknvlplhgipligwtikaaqgcs
yiskvfvstddyeiakiseglgalvinrpeelatdtassidvilhaiswleqkevqkyeg
millqptsplrtshhikeaielyektaakfvisvfepthtpiksylenddgtisglysne
apyqrrqdlprayqpngaiyafsidefklnnhfprnkvfpyvmsevesadidtledlrkv
eeqlkikeink

    Sequence, based on observed residues (ATOM records): (download) 
    >6ifdD (D:)
neyvalitarknvlplhgipligwtikaaqgcsyiskvfvstddyeiakiseglgalvin
rpeelatdtassidvilhaiswleqkevqkyegmillqptsplrtshhikeaielyekta
akfvisvfepthtpiksylenddgtisglysneapyqrrqdlprayqpngaiyafsidef
klnnhfprnkvfpyvmsevesadidtledlrkveeqlk